Overall, these results show that both mutation- and recombination-rate evolution can induce rescue, but successful rescue need not entail persistence of the modifier allele that facilitated it.
Abstract
Evolutionary rescue occurs when genetic adaptation prevents extinction of a declining population. Mutation and recombination generate adaptive variation, but when their rates at adaptive loci are too low, rescue may require evolution toward higher rates of genetic change. Here, we derive and compare analytical approximations for the probability of rescue through two alternative routes: mutation-rate and recombination-rate evolution. Our model comprises two resident genotypes from which the same adaptive haplotype can arise along either route, with rescue requiring the appearance of an unlinked modifier allele that increases mutation at, or recombination between, two fitness-determining loci. We show that resident genotype composition determines the relative success of the two routes. Mutation-rate evolution yields a higher rescue probability when one resident genotype is sufficiently more common because mutation can act on either genotype whereas recombination requires both. Otherwise, the two routes yield similar rescue probabilities. Even when either route makes rescue appreciably likely, however, the modifier alleles facilitating rescue are often lost before rescue is complete. This loss is driven by multiple factors: segregation can separate the modifier from the adaptive haplotype; the fitness cost of modifier expression raises extinction risk for modifier-bearing lineages; and continued modifier-induced mutation disrupts the adaptive haplotype after it forms. The latter effect can make recombination-rate modifiers more likely to persist even when mutation-rate evolution yields a higher rescue probability. Overall, these results show that both mutation- and recombination-rate evolution can induce rescue, but successful rescue need not entail persistence of the modifier allele that facilitated it.
A stochastic eco-evolutionary model is developed to compare rescue probabilities through biological and cultural evolution and demonstrates that transmission bias alters the demographic consequences of cultural evolution and highlights the importance of transmission processes in evolutionary rescue theory.
Theory predicts that populations should evolve mutational robustness — the ability to maintain a constant phenotype despite mutations. However, selection does not operate on individual mutations but on phenotypes resulting from entire replication events, which may involve a variable number of mutations. We therefore di...
Juliette Luiselli, Guillaume Beslon, Pieter van den Berg· bioRxiv· 0 citations
Viral Evolution Simulator (VES), a diffusion model-based framework that mirrors this duality by design, offers a generalizable, sequence-only foundation for tracing evolutionary trajectories and prioritizing mutations for surveillance and experimental validation, pointing toward where functional efforts might matter mo...
The 21st century has seen repeated challenges to the premise that de novo mutations occur independently from their fitness effects. So far, these attempts have been dismissed as technical artifacts, restoring confidence in the null hypothesis. Yet the development of high-resolution genomic resources enables investigati...
G. Barroso, Aaron P. Ragsdale· bioRxiv· 0 citations
A population genetic model of mutation rate modifiers with arbitrary dominance coeffcients is developed, in which fitness effects stem from additional germline mutations, which implies that there are many more modifier sites with recessive effects than semi-dominant ones.
Matin Saeidi, Guy Sella, Molly Przeworski et al.· bioRxiv· 0 citations
It is shown that for a substantial fraction of human variation this assumption fails, and fails predictably: ectopic gene conversion reintroduces the same nucleotide change generation after generation, at rates strongly structured by two fixed properties of genome architecture, homologous template length and donor-acce...
W. Steyaert· bioRxiv· 1 citation
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