Oct 2026· Zenodo (CERN European Organization for Nuclear Research)
Research Data Management PracticesScientific Computing and Data Management
Abstract
A Metadata-driven Infrastructure Supporting FAIR and Open-Source Practices Throughout the Research Software Lifecycle Research software is an essential part of research. It includes standalone tools, scripts, notebooks, and workflows for tasks such as data preparation, analysis, and visualization. When research software is not developed according to FAIR and Open Science principles, it can be difficult to maintain, discover, and reuse. We developed research software management recommendations and a modular tool suite that translates recommendations into practical outcomes. It includes a flexible Software Management Plan (SMP) template compatible with the Data Stewardship Wizard. The machine-readable information captured in the SMP can be exported as structured metadata, edited, and reused to generate documentation, citations, registry metadata, community files, and configurable repository scaffolds. A continuous integration tool validates repository metadata against a defined profile and identifies inconsistencies across metadata files and package manifests. The tool suite is designed for broad applicability, including those with limited programming experience. We piloted the SMP tool at Leiden University Medical Center. Users reported increased awareness of relevant practices and a willingness to implement them. Their feedback informed the tool's development. Our approach connects practical guidance with machine-readable metadata and repository tooling. It helps researchers adopt FAIR and open-source practices and supports research software that is sustainable, understandable, maintainable, discoverable, and reusable.
This publication proposes a definition and a classification of agile software development approaches and analyses ten software development methods that can be characterized as being "agile" against the defined criterion.
P. Abrahamsson, O. Salo, Jussi Ronkainen et al.· arXiv.org· 727 citations· ⚡54
The study shows that agile practices improve both informal and formal communication, but indicates that, in larger development situations involving multiple external stakeholders, a mismatch of adequate communication mechanisms can sometimes even hinder the communication.
M. Pikkarainen, Jukka Haikara, O. Salo et al.· Empirical Software Engineeri...· 401 citations· ⚡48
The results indicate that software engineering work practices are chosen opportunistically, adapted and configured to provide value under the constrains imposed by the startup context.
Nicolò Paternoster, Carmine Giardino, M. Unterkalmsteiner et al.· Information and Software Tec...· 394 citations· ⚡54
It is proved that any global minimizer of the trajectory balance objective can define a policy that samples exactly from the target distribution, and empirically demonstrate the benefits of the trajectories balance objective for GFlowNet convergence, diversity of generated samples, and robustness to long action sequenc...
Esmeralda S. Whitammer, Moksh Jain, Emmanuel Bengio et al.· Neural Information Processin...· 302 citations· ⚡60