The identification and characterize of a novel cellulase from a high-altitude soil metagenome library using functional screening method and the development of new enzymatic preparations with a novel multi-functional GH6 family enzyme suggest potential utility in industrial processes.
Abstract
Cellulases are crucial for converting biomass into renewable energy. Despite extensive research, there remains a significant industrial demand for novel cellulases, particularly those with multi-substrates catalytic activity. This study aimed to identify and characterize a novel cellulase from a high-altitude soil metagenome library using functional screening method. A novel 1218-bp GH6 family hydrolase gene, designated zfy1641, was identified from a Mount Everest soil library. Bioinformatics analysis indicated that it encoded a 405-amino-acid protein (43.7 kDa) and was classified into glycoside hydrolase family 6 (GH6). The target glycoside hydrolase gene was cloned and heterologously expressed, then the recombinant protein was purified, and its biochemical properties and kinetic parameters were characterized. The purified recombinant enzyme exhibited broad substrate specificity, demonstrating significant activity against carboxymethyl cellulose (CMC-Na; 69.87 ± 0.13 U/mg), locust bean gum (125.56 ± 0.18 U/mg) and chitin (77.06 ± 0.08 U/mg). ZFY1641 represented a novel member of the GH6 family, that exhibited detectable reducing sugar release from chitin-a function not previously documented for this family. Moreover, ZFY1641 demonstrated optimal activity at 50°C and pH 5.0, and exhibited moderate thermal stability, tolerance to selected metal ions, and halophilicity under the conditions tested. These characteristics suggest potential utility of ZFY1641 in industrial processes, though further validation is required. This work expanded the substrate diversity of GH6 family enzymes and provided a foundation for the development of new enzymatic preparations with a novel multi-functional GH6 family enzyme.
This study presents the first characterization of a GH3 β-glucosidase from L. buchneri and reveals a non-classical stabilizing effect of EDTA, offering valuable insights for enzyme engineering and biocatalytic applications.
Hui Tang, Jinjian He, Can Li et al.· Metabolites· 0 citations
BACKGROUND
The discovery of novel biocatalysts for the sustainable valorization of complex biomass feedstocks remains a significant challenge. Domain-centric exploration of characterized CAZyme families offers a promising but underexplored strategy for identifying enzymes with unusual architectures and potentially expanded substrate specificities.
RESULTS
Systematic analysis of archaeal glycoside hydrolase family 18 (GH18) chitinases using the CANDy domain annotation pipeline led to the identification of TcChi from Thermococcus chitonophagus, a multidomain enzyme combining a GH12 and a GH18 catalytic domain alongside two carbohydrate-binding modules. Given that T. chitonophagus also encodes dedicated standalone cellulases and chitinases, we hypothesized that this multidomain assembly may have evolved a broader functional range than either composing domain alone. Biochemical assays of truncated constructs confirmed this hypothesis: the GH18 domain hydrolyzed chitin, chitosan, and β-1,3-glucan, marking the first report of β-1,3-glucanase activity (EC 3.2.1.58) in a GH18 chitinase, while the GH12 domain exhibited strong cellulase activity alongside unexpected chitosanase activity (EC 3.2.1.132), extending the known functional range of this family. Both domains demonstrated high thermostability consistent with the hyperthermophilic origin of T. chitonophagus.
CONCLUSIONS
TcChi is a thermostable, multifunctional biocatalyst capable of degrading chitin, chitosan, cellulose, and β-1,3-glucan from a single protein scaffold, making it a promising candidate for consolidated biomass deconstruction and waste valorization. These findings also demonstrate that domain-centric analysis of CAZyme families is an effective strategy for uncovering hidden functional diversity in well-characterized enzyme families.
Alex Windels, S. Dhaene, Tom Desmet· Biotechnology for Biofuels a...· 0 citations
Industrial enzymes are widely used in diverse applications, but low productivity limits their further widespread utilization. This research aimed to develop high-performance alkaline protease (AprE) expression strains of Bacillus licheniformis through element optimization and modular engineering. Firstly, the aprE gene expression cassette was systematically optimized through element engineering. To minimize host background interference, five large gene fragments were deleted from the genome of B. licheniformis DW2. This expression cassette and genome-reduced strain resulted in 5.77-, 4.84- and 1.31-fold increases in the activities of alkaline protease, nattokinase and chitinase, respectively. Crucially, metabolomics analysis then served as the pivotal discovery tool, revealing that high expression of AprE was constrained by insufficient precursor amino acids and excessive metabolic overflow. Subsequently, the amino acid biosynthesis, energy metabolism, overflow metabolism, and cell membrane/wall modules of the strain were successively modified. The final AprE expression host DM6E10 achieved a remarkable enzyme activity of 34,343 U/mL, with a maximum activity of 107,100 U/mL in a 5-L bioreactor. This study built an efficient cell factory for AprE production and provided insights for the optimization of other protein expression hosts.
Qing Zhang, Mengyuan Zhang, Zhihao Zhu et al.· Synthetic and Systems Biotec...· 0 citations
Insights are provided into putative glycosyl hydrolase candidates for efficient lignocellulosic waste pre-treatment and significant predicted halophilic and thermostable properties are revealed, suggesting these putative enzymes may endure industrial conditions.
Zhen Wei Tan, Muhamad Naim Abd Malek, Kah Yaw Ee et al.· Journal of General and Appli...· 0 citations
Local enrichment of acidic residues on the PlGH3 surface could generate a negative electrostatic potential, which enables adaptation to high-salt and alkaline environments, thereby sustaining the enzyme's catalytic activity under such extreme conditions.
Kaijuan Wu, Ke Guo, Zheng Yu et al.· Applied Biochemistry and Bio...· 0 citations