Skip to content
Open access

An Explainable AutoML Pipeline for Multi-Task Tabular Data Using Optuna and SHAP

Aug 2026 · Journal of ISMAC · Vol 8, pp. 292-307 · 0 citations · 14 references

TL;DR

This research introduces an Explainable AutoML Pipeline for performing automated data pre-processing, multi-model learning, hyperparameter optimization using Optuna, model selection using a leaderboard, and finally interpreting the results using SHAP.

Abstract

Developing interpretable models on structured tabular data is difficult because there is a sequence dependency among data pre-processing, model learning, hyperparameter tuning, and result interpretation. The existing AutoML systems focus more on predictive accuracy rather than having an integrated approach towards explainability for different types of learning tasks. In this research, we introduce an Explainable AutoML Pipeline for performing automated data pre-processing, multi-model learning, hyperparameter optimization using Optuna, model selection using a leaderboard, and finally interpreting the results using SHAP. The framework automatically performs preprocessing on the input data, optimizes various candidate models, and determines the most suitable learning algorithm without any human intervention while also offering explanations about the decision-making process on a per-feature level. Model validation is then done by applying it to the California Housing and Titanic datasets. In particular, the optimized LightGBM model scored 0.8470 on the regression R2 metric, while the optimized XGBoost classifier managed to reach 81.56% accuracy, an F1-score of 0.7481, and an AUC of 0.8117. The SHAP analysis successfully detected the most influential predictive features, which increases the model interpretability

Read PDF

Similar papers

Book Open access Aug 2026

Taming Structured Data Foundation Models with AutoML: A Hands-On Guide

Structured data drives enterprise decision-making, yet building predictive pipelines for time-series and tabular modalities requires intensive feature engineering, model selection, and other ''tricks of the trade''. AutoGluon, an open source AutoML system, automates this through multi-layer stack ensembling, providing a unified API that reliably achieves state-of-the-art accuracy across time series and tabular data. Concurrently, Foundation Models for Structured Data (FM4SD) have emerged to push the boundaries of predictive performance, enabling both powerful zero-shot inference and efficient fine-tuning. Specifically, Chronos-2 delivers state-of-the-art multivariate forecasting for time series, while a rapidly growing ecosystem of tabular foundation models (e.g., TabPFN, Mitra, TabICL) transforms how practitioners execute classification and regression tasks. This system-focused tutorial teaches attendees how to operationalize FM4SDs using AutoML across temporal and tabular modalities, with an additional highlight on the newly released Chronos-2. We guide participants through a technical progression: establishing AutoGluon as the orchestration framework, detailing the internal mechanics of Chronos-2 and various tabular FMs, and unifying them into production-ready pipelines.

Boran Han, Nick Erickson, Abdul Fatir Ansari et al. · 0 citations
Open access Jul 2026

Bridging Scalability and Interpretability in AutoML Via Feature Engineering

Experimental evaluation on the Madelon dataset indicates that the automated and interpretable pipeline performs comparably to, and in some respects favourably against, baseline feature engineering approaches, demonstrating the practical effectiveness of combining scalable feature generation with interpretable AutoML.

Ms. CH. Vasavi, Ms. SK. Raqeeba · 0 citations
Preprint Jul 2026

Complexity-Budgeted, Interaction-Aware Interpretable Model for Tabular Data

Results support IAIML as a compact, interaction-aware framework appropriate for settings where bounded explanation size and controlled treatment of feature interactions are design requirements.

S. Krishnamoorthy · 0 citations
Preprint Jul 2026

PPL-Factory: Task-Aware and Budget-Aware Data Selection from Language Modeling to Reasoning

PPL-Factory is proposed, a simple and interpretable data selection framework that combines task-aware perplexity-based scores and data budget-aware selection criteria that outperforms other state-of-the-art data selection methods using only $1\%$ of the training set.

Hang Zhang, Warren J. Gross · 0 citations