This work proposes EnSI-RAG (Entity-Structure-Indexed Retrieval-Augmented Generation), a framework that constructs a query-independent, entity-centered index that separates evidence localization from answer synthesis while preserving traceable source evidence.
Abstract
Question answering (QA) over long, connected documents remains challenging because relevant evidence may span multiple entities and their relationships. Existing retrieval-augmented generation (RAG) methods typically index documents as raw chunks and retrieve them through embedding similarity. Their performance degrades when chunk boundaries separate entities from supporting evidence or when a question requires multi-hop reasoning across the corpus. We propose EnSI-RAG (Entity-Structure-Indexed Retrieval-Augmented Generation), a framework that constructs a query-independent, entity-centered index. Each record (e, t, k, v) represents an entity e, its type t, a semantic category k in {property, relation, aspect}, and a value v, while retaining links to the original source passages. At query time, these records serve as retrieval handles, and an LLM synthesizes the retrieved passages into the final answer. This design separates evidence localization from answer synthesis while preserving traceable source evidence. Across Loong and Oolong, EnSI-RAG achieves an average accuracy of 78.24. Relative to the published baseline scores used as references, this is 6.62 points higher, suggesting its effectiveness across these settings. The code is available at https://github.com/RamonMeng/EnSI-RAG.
Scientific question answering requires a retrieval system to solve two distinct problems: identifying which papers are relevant and locating the supporting evidence within those papers. Conventional retrieval-augmented generation typically addresses both through similarity search over fixed-length passages, flattening document structure and separating scientific claims from their methodological and argumentative context. We present VecTree-RAG, an agentic framework that assigns these tasks to complementary retrieval mechanisms. Vector search ranks compact document and section representations across the corpus, whereas reasoning-guided traversal of source-verified section trees localizes evidence within shortlisted papers. Full text is retained in a page store and exposed progressively only after structural localization. We evaluate VecTree-RAG on 300 QASPER questions, an open-access subset of 54 LitQA2 questions, and 49 multi-document MOSAIC questions. Compared with Dense RAG, reranked Dense RAG, RAPTOR, and Search-o1, VecTree-RAG obtained the highest observed answer score on all three benchmarks, reaching 0.800 LLM-judge correctness on QASPER, 0.925 accuracy on LitQA2, and a 0.547 composite score on MOSAIC. On QASPER, its evidence-page precision was 0.274, compared with 0.046--0.071 for the baselines. LitQA2 ablations further showed that the complete vector--tree architecture required fewer inference tokens than variants without tree navigation or corpus-level vector routing. These results indicate that vector retrieval narrows the corpus-level search space and tree navigation concentrates reading on structurally relevant evidence. Although multi-turn inference remains more expensive than single-call retrieval, VecTree-RAG provides a structure-aware and traceable architecture for scientific literature question answering.
Xinyan Zhong, Yuwei Shi, Yu-Qi Wei et al.· 0 citations
W-RAG is proposed, a source-aware retrieval framework that performs ontology-guided retrieval, local ranking within each knowledge base, and source-level weighting to regulate evidence composition to improve document coverage and generation quality.
Hridya Dhulipala, Rajesh Ombase, Michael Wang et al.· 0 citations
GraphRAG improves long-document question answering by introducing structured representations beyond conventional retrieval. However, automatically constructed graphs are inherently incomplete projections of source documents, and treating them as independent knowledge sources may lead to unreliable retrieval and generation. We propose PAGE-RAG, a projection-aware adaptive graph retrieval framework for reliable long-document question answering. PAGE-RAG views graph structures as semantic skeletons that organize and navigate document knowledge, rather than replacing the original knowledge source. Based on this perspective, PAGE-RAG introduces a task-adaptive retrieval routing strategy that dynamically selects appropriate retrieval behaviors according to query requirements. Furthermore, PAGE-RAG incorporates strict knowledge boundary control, ensuring that generated responses remain grounded within available evidence and abstaining from unsupported information beyond the accessible knowledge scope. Experiments demonstrate that PAGE-RAG achieves competitive answer quality while improving retrieval efficiency and knowledge reliability, highlighting the importance of projection-aware graph modeling, adaptive retrieval, and explicit knowledge boundary control for trustworthy GraphRAG systems. The source code is publicly available at https://github.com/CXY0112/PAGE-RAG.
Xingyu Chen, Junxiu An, Jun Guo et al.· 0 citations
Large Language Models (LLMs) show considerable potential for materials-science question answering. However, LLM responses may still be affected by unsupported parametric associations, while dense Retrieval-Augmented Generation (RAG) can fragment relational evidence across text chunks. Moreover, general graph-based retrieval does not necessarily preserve the hierarchical relations and factual attributes required to resolve implicit material constraints. To address these limitations, we propose MCTD-KG, a multi-source heterogeneous knowledge graph integrated with a Knowledge-Enhanced RAG framework for complex material question answering. MCTD-KG adopts a Classification–Term–Data ontology to connect disciplinary taxonomies, domain concepts, semantic relations, and empirical records from toolbooks and the scientific literature. Through LLM-assisted knowledge extraction, entity normalization, and multi-source integration, the resulting graph contains more than 530,000 entities across three layers, including 61,768 text-extracted Term-layer entities. During inference, Dual-Channel Retrieval jointly retrieves query-relevant relational paths and associated material attributes, while an explicit semantic filtering stage screens candidate evidence against the query constraints. Evaluation on an expert-validated benchmark of 1577 questions shows that the proposed framework achieves an overall accuracy of 68.48%, compared with 17.40% for the zero-shot Pure LLM, 24.79% for the best Vanilla RAG setting, and 44.96% for GraphRAG. It also achieves 45.22% accuracy on four-hop questions, compared with 39.49% for GraphRAG. These results indicate that integrating multi-source domain knowledge with relation-preserved retrieval and attribute-supported filtering provides more focused and inspectable evidence, thereby supporting more accurate complex material question answering.
Peize Li, Xi Guo, Nan Yin et al.· Electronics· 0 citations
This work proposes Trident, with two complementary components: Trident-R, a retriever-agnostic LLM reranker that converts each candidate into an LLM-readable semantic record, then performs a single adaptive-K rerank call; and Trident-S, a generation-side module that prompts the VLM under topical, entity, and structural lenses before synthesis.
Guanchen Wu, Jiayuan Ding, Subhabrata Mukherjee et al.· 0 citations
This work introduces MMHRAG, a novel Multi-Modal Hierarchical Retrieval-Augmented Generation framework that achieves cross-modal interaction on DocQA for the first time, and designs a Summarizing Agent to resolve logical conflicts, information redundancy, and granularity discrepancies among retrieved cross-modal evidence.
Jiayuan Wang, Jie Lian, Fu Zhao et al.· Proceedings of the 32nd ACM...· 0 citations