A Comparative Study of Counterfactual Explainers for Graph Neural Networks Enabling Multiple Types of Graph Edit
Maria Myrto VilliaFilippos GouidisTheodore PatkosPanos Trahanias
Sep 2026
Machine Learning
Abstract
Counterfactual explanations for graph-structured data seek to determine minimal and realistic modifications required in an input graph to alter a model's prediction to a predefined output. Although counterfactual explainers that support modifying the graph by both adding and removing edges have recently emerged, there is still a lack of general and efficient methods, especially when considering the quality of the generated explanations. Moreover, the problem remains far from solved, as existing methods exhibit different strengths and weaknesses, often trading off between explanation size, coverage and quality. For this reason, it is important to identify where each method performs well and where it falls short, so as to guide future research in the field. Thus, our study compares six state-of-the-art (SOTA) models on a diverse set of real-world and synthetic datasets, covering both binary and multi-class graph and node classification tasks, and evaluates their performance using diverse quantitative and qualitative metrics.
The results indicate that software engineering work practices are chosen opportunistically, adapted and configured to provide value under the constrains imposed by the startup context.
Nicolò Paternoster, Carmine Giardino, M. Unterkalmsteiner et al.· Information and Software Tec...· 394 citations· ⚡54
The possibility of inferring high-dimensional data inference in a model that consists of a prior and an auxiliary differentiable constraint given some additional information is considered, thereby allowing a range of potential applications in adapting models to new domains and tasks.
Alexandros Graikos, Esmeralda S. Whitammer, N. Jojic et al.· Neural Information Processin...· 316 citations· ⚡15
It is proved that any global minimizer of the trajectory balance objective can define a policy that samples exactly from the target distribution, and empirically demonstrate the benefits of the trajectories balance objective for GFlowNet convergence, diversity of generated samples, and robustness to long action sequences and large action spaces.
Esmeralda S. Whitammer, Moksh Jain, Emmanuel Bengio et al.· Neural Information Processin...· 302 citations· ⚡60
This state-of-practice investigation was performed using a literature review followed by a multiple-case study approach and presents how inconsistency between managerial strategies and execution can lead to failure by means of a behavioral framework.
Carmine Giardino, Xiaofeng Wang, P. Abrahamsson· International Conference on...· 175 citations· ⚡19
This study conducts a case survey study based on the secondary data of the major pivots happened in 49 software startups, and demonstrates that customer need pivot is the most common among all pivot types.
Sohaib Shahid Bajwa, Xiaofeng Wang, Anh Nguyen-Duc et al.· Empirical Software Engineeri...· 127 citations· ⚡15
Minimum viable product (MVP) is the main focus of both business and product development activities in software startups. We empirically explored five early stage software startups to understand how MVP are used in early stages. Data was collected from interviews, observation and documents. We looked at the MVP usage from two angles, software prototyping and boundary spanning theory. We found that roles of MVPs in startups were not fully aware by entrepreneurs. Besides supporting validated learning, MVPs are used to facilitate product design, to bridge communication gaps and to facilitate cost-effective product development activities. Entrepreneurs should consider a systematic approach to fully explore the value of MVP, as a multiple facet product (MFP). The work also implies several research directions about prototyping practices and patterns in software startups.
Anh Nguyen-Duc, P. Abrahamsson· International Conference on...· 92 citations· ⚡9
Related blog posts
MIT News · Artificial Intelligence· news.mit.eduSep 9, 2026
A weeklong summer workshop brought higher education faculty to campus to explore how AI and machine learning materials can be adapted for their classrooms.
A new machine-learning framework aims to improve the success rate of computational protein design while moving away from results that reproduce sequences found in nature.
We use cookies to run the site and, with your consent, for analytics and to show ads.
See our Cookie Policy.