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Learning from VAE Errors to support ECG-based Differential Diagnosis of Myocardial Scar

Shayan Sharifi Riccardo Treu Ilaria Gandin Federico Garoia Marco Merlo Giulia Cisotto
Sep 2026
Machine Learning Data Science

Abstract

Late Gadolinium Enhancement (LGE) on cardiac magnetic resonance is a key marker of myocardial scar, but its limited accessibility motivates routine ECG-based screening. We evaluated whether $\beta$-variational autoencoder (VAE)-derived ECG representations can discriminate LGE+ from LGE- cardiomyopathic patients in a local cohort of 300 subjects. We compared 32-dimensional features from the foundation ECGx.AI model with those from a shallower $\beta$-VAE trained on normal PTB-XL ECGs, evaluating downstream classification and Dynamic Time Warping (DTW)-based reconstruction errors. ECGx.AI reached an area under ROC of 0.686 with Random Forest, while the proposed $\beta$-VAE reached 0.577 with sensitivity of 0.775 with Gradient Boosting. Notably, DTW-reconstruction errors significantly differed between classes in 10 out of 12 leads according to Mann-Whitney U test and help in classification, leading to an area under ROC of 0.643 with Logistic Regression, supporting their potential as markers of scar-related ECG alterations.

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