Skip to content
Open access

From Hodgkin-Huxley to Pretrained Neural Inference AI

Jul 2026 · bioRxiv · 0 citations · 69 references
Biology

TL;DR

By pre-training artificial neural networks exclusively on large-scale synthetic data, this work demonstrates robust zero-shot generalization across diverse brain regions, experimental paradigms and species, enabling the accurate inference of single-unit activities and cell-type properties without exposure to real data.

Abstract

High-density probes record from thousands of neurons simultaneously, yet resolving single-neuron identity remains an illposed inverse problem. While detailed simulations precisely characterize the biophysical forward process, their utility for interpreting brain signal remains unclear. Here we show that biophysical simulations of population neuronal electrical signals serve as an effective bridge between theory and experiment. By pre-training artificial neural networks exclusively on large-scale synthetic data, we demonstrate robust zero-shot generalization across diverse brain regions, experimental paradigms and species, enabling the accurate inference of single-unit activities and cell-type properties without exposure to real data. Further-more, uncovering a substantial population of functionally competent but weakly active neurons systematically obscured by conventional heuristics, our framework resolves a long-standing discrepancy regarding ocular dominance in mouse primary visual cortex. These findings establish biophysical simulations as a reference standard, bridging the gap between theoretical understanding and experimental observation through data-driven inference.

Read PDF

Similar papers

Open access Aug 2026

Shared and idiosyncratic coding regimes coexist in macaque IT

Population-level measurements portray object representations in primate inferotemporal cortex (IT) as smooth, low-dimensional, and predictable by deep neural networks (DNNs). However, it remains unclear whether this structured population-level picture is representative of the full diversity of its constituent neurons....

Qi Lu, Xin-Yi Xiong, Yang Li et al. · 0 citations
#machine learning Review Sep 2026

Feature Superposition in Neural Networks: From Theory to Practice

This survey reviews the geometry, learning, and computation of superposed representations, explaining how feature statistics and decoder choice affect the conclusions and compares practical methods for recovering and analyzing features.

Dai Shi, Xiao-Yu Li, Andi Han et al. · 0 citations
Review Open access Sep 2026

Direct codes in a distributed age.

Large-scale recordings and state-space analyses have transformed systems neuroscience by revealing low-dimensional structure in neural population activity. Yet these advances also invite a risk: they can obscure the neurobiological organization that gives rise to computation. I revisit Horace Barlow's distinction betwe...

M. Shadlen · 1 citation
Conference Open access Aug 2026

EITransformer: A Neurophysiology-Constrained Gray-Box Transformer for High-Fidelity EEG Generation

Understanding and simulating spontaneous brain activity is a central goal in neuroscience. Conventional neural mass models are interpretable but rely on fixed equations, which limits their ability to capture individual-specific nonlinear dynamics. Purely data-driven approaches fit data well but ignore the critical neur...

Xiaolong Cui, Jian-Hui Xue, Lan Yan et al. · 0 citations

We use cookies to run the site and, with your consent, for analytics and to show ads. See our Cookie Policy.