Open access
Oct 2026
The ModelSEED Biochemistry Database, 2026 update: grading multi-source thermodynamics
A. Freiburger, José P. Faria, Rui-Jie Zhu et al.
· bioRxiv · 0 citations
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Understanding Protein-DNA Interactions by Paying Attention to Protein and Genomics Foundation Models
This work proposes Seq2Contact, a novel method to predict the protein-NA binding at a single nucleotide (DNA) and single amino acid (Protein) level, which is computationally more efficient, with up to 80% less memory cost and more than 90% less inference time.
D. Rajwade, Erica Wang, Aryan Satpathy et al.
· 1 citation
Review
Jul 2026
Meso-soup: A Community Approach to Building a Computational Description of the Biological Mesoscale.
The theoretical, computational and cultural challenges that need to be overcome to gain an understanding of the biological mesoscale are described and potential solutions are offered.
Sarah Harris, Gianluca Lattanzi, Angelo Rosa et al.
· Biophysical Journal · 0 citations