Author

Bruce J. Wittmann

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#protein folding Open access Sep 2026

Inverse FoldDir: Structure-conditioned Protein Sequence Design by Dirichlet Flow Matching

Inverse FoldDir is a structure-conditioned protein redesign method that combines structural recovery, user control, experimental validation, and a natural route toward future property-guided sampling that performs iterative denoising on the amino acid probability simplex.

Alp Tartici, M. Stojkovic, An-Ru Tian et al. · bioRxiv · 0 citations

#machine learning Preprint Sep 2026

Advances in Machine Learning for Directed Evolution: A Five-Year Retrospective

It is argued that a disconnect between the goals of machine-learning-assisted directed evolution researchers--"identify an optimal protein"--and the goals of directed evolution more broadly--"identify a sufficient protein given time and resource constraints"--is a principal culprit.

Bruce J. Wittmann · 0 citations