Author

Jun Ding

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Open access Jul 2026

ProtSyntax: a protein large language model for decoding post-translational modification syntax and function

ProtSyntax is introduced, a PTM-aware foundation protein language model combining protein-aware positional encoding, bidirectional state-space propagation, geometry-constrained attention and adaptive multi-objective learning that has the potential to decode the regulatory language of the modified proteome.

Yiyu Lin, Jiahui Wu, You Zhou et al. · bioRxiv · 0 citations

Open access Jul 2026

Fine-tuned large language models enhance influenza forecasting.

A lightweight fine-tuning framework is developed that adapts pre-trained LLMs using compact embedding and prediction layers and evaluates it on seven weekly aggregated real-world surveillance datasets, establishing fine-tuned LLMs as efficient and robust forecasting tools suitable for privacy-sensitive, data-scarce pub...

Chen-Xiang Li, Wen-Jing Gao, Qiqiao Zhang et al. · Cell Reports Methods · 0 citations