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Fine-tuned large language models enhance influenza forecasting.

Jul 2026 · Cell Reports Methods · Vol 6, pp. 101535 · 0 citations · 26 references
Medicine

TL;DR

A lightweight fine-tuning framework is developed that adapts pre-trained LLMs using compact embedding and prediction layers and evaluates it on seven weekly aggregated real-world surveillance datasets, establishing fine-tuned LLMs as efficient and robust forecasting tools suitable for privacy-sensitive, data-scarce public health applications.

Abstract

Influenza-like illness (ILI) remains a persistent global health challenge, necessitating accurate forecasting tools for timely public health response. This study systematically benchmarks fine-tuned large language models (LLMs), e.g., Llama2 and GPT2, for influenza surveillance forecasting in data-limited time-series settings. We develop a lightweight fine-tuning framework that adapts pre-trained LLMs using compact embedding and prediction layers and evaluate it on seven weekly aggregated real-world surveillance datasets. Despite sample sizes of only ∼523 time points per region and the absence of cloud-based data transfer, fine-tuned LLMs consistently outperform SARIMA, LSTM, PatchTST, CoVTransformer, FEDformer, Time-LLM, and GPT4TS in both accuracy and stability, especially for long-term forecasts across diverse geographic settings. Even in zero-shot settings, pre-trained LLMs capture broad epidemic trends with performance comparable to SARIMA. These findings establish fine-tuned LLMs as efficient and robust forecasting tools suitable for privacy-sensitive, data-scarce public health applications.

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