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Yue Gao

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#protein folding Preprint Aug 2026

Hyper-Fold: Exploring the Expressive Limit of Sequence-Geometry Learning for Proteins via Hypergraph Modeling

Hyper-Fold is introduced, a rank-K separable convolutional backbone approaching this ceiling at message-passing cost, suggesting that a sufficiently expressive 3D backbone recovers information that fusion architectures previously borrowed from evolution-scale pretraining.

Yifan Feng, Guang Cheng, Shihui Ying et al. · 0 citations
#artificial intelligence Preprint Aug 2026

Hyper-Fold: Exploring the Expressive Limit of Sequence-Geometry Learning for Proteins via Hypergraph Modeling

Protein structure modeling rests on a single computational primitive: the interaction between what a residue is (sequence content) and where it sits (three-dimensional geometry). What is the expressive limit of this layer class? We show that the complete bilinear operator over content-geometry outer products--the suffi...

Yifan Feng, Guang Cheng, Shihui Ying et al. · 0 citations

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