Crystal graph neural networks predict materials properties by propagating information through local atomic environments. In conventional crystal graph convolutional neural networks (CGCNNs), this propagation depth is increased by stacking independently parameterized convolutional layers. This coupling between message-passing depth and parameter count raises a simple question: can repeated application of the same learned local update recover most of the benefit of a deeper CGCNN? We address this question by introducing a shared-recurrent CGCNN (SR-CGCNN), in which the main crystal-graph convolutional weights are tied across recurrent message-passing steps. The graph construction, pooling operation, and prediction head are kept unchanged, allowing a controlled comparison with standard CGCNN baselines. On Materials Project-derived formation energy and band-gap datasets, a three-step SR-CGCNN approaches the accuracy of a standard three-layer CGCNN while using only 34.5% of its trainable convolutional parameters. The formation energy test mean absolute error changes from 0.0945 to 0.0986 eV atom −1 , while the band-gap error changes from 0.4346 to 0.4503 eV. These results indicate that repeated shared message passing can provide a parameter-efficient approximation to stacked CGCNN depth, offering a compact recurrent interpretation of crystal graph convolution.
Agile methods continue to gain popularity. In particular, the Scrum method appears to be on the verge of becoming a de-facto standard in the industry, leading the so called Agile movement. While there are success stories and recommendations, there is little scientifically valid evidence of the challenges in the adoptio...
A. Marchenko, P. Abrahamsson· Agile Conference· 59 citations· ⚡11
A comprehensive taxonomy of the challenges faced when a medium-scale organization decided to adopt software platforms is provided, namely: business challenges, organizational challenges, technical challenges, and people challenges.
Yaser Ghanam, F. Maurer, P. Abrahamsson· Information and Software Tec...· 41 citations· ⚡3
It is shown that high article processing charges are not sufficiently justified by the publishers, which often lack transparency and may prevent authors from adopting OA.
D. Graziotin, Xiaofeng Wang, P. Abrahamsson· Scientometrics· 21 citations· ⚡1
MCGLPPI, a novel geometric representation learning framework that combines graph neural networks (GNNs) with the MARTINI molecular coarse-grained (CG) model to predict overall PPI properties accurately and efficiently, offers an effective and efficient solution for PPI overall property predictions.
Yang Yue, Shu Li, Yihua Cheng et al.· bioRxiv· 15 citations
Abstract Predicting properties from coordinate–category data—sets of vectors paired with categorical information—is fundamental to computational science, manifesting in materials science as predicting formation energies or elastic moduli from crystal structures. While large language models (LLMs) have increasingly been...
Nawaf Alampara, Santiago Miret, Kevin Maik Jablonka· Nature Computational Science· 13 citations
PepPCBench enables a robust evaluation of PFNN-based methods and supports their continued development for peptide-protein structure prediction, and highlights the influence of peptide length, conformational flexibility, and training set similarity on prediction accuracy.
Si-Long Zhai, Huifeng Zhao, Ji-Ke Wang et al.· Journal of Chemical Informat...· 13 citations· ⚡1
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