We present three open-access datasets containing density functional theory (DFT) calculations for refractory solid-solution binary alloys niobium–zirconium (NbZr), tantalum–zirconium (TaZr), and vanadium–zirconium (VZr) in 128-atom body-centered-cubic (BCC) supercells. These datasets extend our previously published first-principles collections for NbTa, NbV, TaV, and NbTaV alloys and were generated with the same automated high-throughput workflow based on the Vienna Ab-Initio Simulation Package (VASP). For each of the three NbZr, TaZr, and VZr systems, we uniformly sample 31 chemical compositions across the full composition range in 4-atom increments. For every composition we construct 100 distinct disordered atomic configurations by randomizing the element assignments on the BCC lattice sites. All structures are fully relaxed, and the released data include complete input files, detailed VASP outputs for each relaxation stage, and derived physical quantities such as ground-state formation energy and root mean-squared displacement (RMSD) relative to an ideal BCC reference. These Zr-containing binaries are motivated by our earlier demonstration that graph neural networks (GNNs) trained on binary NbTa, NbV, and TaV data can interpolate formation enthalpies and structural descriptors in ternary NbTaV alloys while dramatically reducing the required number of ternary DFT calculations. The new NbZr, TaZr, and VZr datasets increase the diversity of available binary training data, in particular in systems with larger size mismatch and stronger lattice distortion due to Zr, and are intended to support the development of transferable machine learning (ML) interatomic models for accelerated exploration of high-dimensional multicomponent alloy spaces.
Agile methods continue to gain popularity. In particular, the Scrum method appears to be on the verge of becoming a de-facto standard in the industry, leading the so called Agile movement. While there are success stories and recommendations, there is little scientifically valid evidence of the challenges in the adoptio...
A. Marchenko, P. Abrahamsson· Agile Conference· 59 citations· ⚡11
A comprehensive taxonomy of the challenges faced when a medium-scale organization decided to adopt software platforms is provided, namely: business challenges, organizational challenges, technical challenges, and people challenges.
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It is shown that high article processing charges are not sufficiently justified by the publishers, which often lack transparency and may prevent authors from adopting OA.
D. Graziotin, Xiaofeng Wang, P. Abrahamsson· Scientometrics· 21 citations· ⚡1
MCGLPPI, a novel geometric representation learning framework that combines graph neural networks (GNNs) with the MARTINI molecular coarse-grained (CG) model to predict overall PPI properties accurately and efficiently, offers an effective and efficient solution for PPI overall property predictions.
Yang Yue, Shu Li, Yihua Cheng et al.· bioRxiv· 15 citations
PepPCBench enables a robust evaluation of PFNN-based methods and supports their continued development for peptide-protein structure prediction, and highlights the influence of peptide length, conformational flexibility, and training set similarity on prediction accuracy.
Si-Long Zhai, Huifeng Zhao, Ji-Ke Wang et al.· Journal of Chemical Informat...· 13 citations· ⚡1
Abstract Predicting properties from coordinate–category data—sets of vectors paired with categorical information—is fundamental to computational science, manifesting in materials science as predicting formation energies or elastic moduli from crystal structures. While large language models (LLMs) have increasingly been...
Nawaf Alampara, Santiago Miret, Kevin Maik Jablonka· Nature Computational Science· 13 citations
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