Mental health disorders, much like the neural system responsible for them, are
multidimensional concepts of compounding complexity. Characterising psychopathology
may require examining large-scale network organisation rather than isolated regions or
small-scale networks. Despite the growth of network neuroscience as a field, relatively
little work has examined whether global topological features of whole-brain functional
networks differentiate affective disorders, particularly in the context of comorbidity.
This study investigates how the topological features of complex functional brain networks
differ across anxiety, depression and control groups in an adolescent sample. A novel
methodological feature of the study was the combination of participant-specific
permutation thresholding, separate positive and negative network analyses, and graph
theoretic metrics.
Resting-state fMRI data from the Boston Adolescent Neuroimaging of Depression and
Anxiety (BANDA) cohort of the Human Connectome Project (HCP) were used to construct
individual-level correlational networks. To control the family-wise error rate, correlation
matrices were corrected using a two-tailed threshold calculated from a participant-specific
permuted null distribution. Null values were generated by phase-randomizing each
participant’s fMRI time series, computing correlations, and extracting the minimum and
maximum values across 10,000 permutations. Each corrected network was split into a
positive network and negative network. The negative networks were converted to absolute
values and analysed with the same metrics as positive networks. Graph-theoretic metrics
included clustering coefficient as a measure of network segregation, average shortest path
length as a measure of network integration, and assortativity as an index of network
resistance. Group differences in these metrics were assessed using an ANOVA. Significant
differences were further analysed using a post-hoc Tukey’s Honestly Significant Difference
(HSD) to determine whether comorbid conditions exhibit significantly distinct topological
signatures. ANOVA results showed a significant difference between groups only for the
assortativity of the positive network. Tukey’s HSD test showed a significant difference
between the anxiety and control groups. The difference between anxiety and depression
came close but did not reach statistical significance, whereas the difference between
depression and control was not significant.
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A comprehensive taxonomy of the challenges faced when a medium-scale organization decided to adopt software platforms is provided, namely: business challenges, organizational challenges, technical challenges, and people challenges.
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It is shown that high article processing charges are not sufficiently justified by the publishers, which often lack transparency and may prevent authors from adopting OA.
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MCGLPPI, a novel geometric representation learning framework that combines graph neural networks (GNNs) with the MARTINI molecular coarse-grained (CG) model to predict overall PPI properties accurately and efficiently, offers an effective and efficient solution for PPI overall property predictions.
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PepPCBench enables a robust evaluation of PFNN-based methods and supports their continued development for peptide-protein structure prediction, and highlights the influence of peptide length, conformational flexibility, and training set similarity on prediction accuracy.
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Abstract Predicting properties from coordinate–category data—sets of vectors paired with categorical information—is fundamental to computational science, manifesting in materials science as predicting formation energies or elastic moduli from crystal structures. While large language models (LLMs) have increasingly been...
Nawaf Alampara, Santiago Miret, Kevin Maik Jablonka· Nature Computational Science· 13 citations
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