Abstract Low-gap conjugated polymers are widely studied for optoelectronic applications, but their vast repeat-unit space makes exhaustive quantum-chemical screening impractical. We developed SizeResGraph, a directed-bond graph neural network with a bounded size-dependent readout, to rank thiophene-containing repeat units by their hydrogen-capped GFN2-xTB HOMO–LUMO gaps. The model learned from 9,905 labeled structures curated from 540,650 public records. Across 10 scaffold partitions and five training seeds, SizeResGraph matched Chemprop D-MPNN within a prespecified ±0.010 eV RMSE equivalence margin. An end-to-end run ranked 419,564 prospective structures in 500.9 s using one RTX 4090 and 16 CPU threads. Direct GFN2-xTB calculations confirmed strong enrichment of the low-gap tail, with Low 5% hit fractions of 88.6% for SizeResGraph and 81.8% for equal-budget Chemprop. In a prediction-independent systematic sample, SizeResGraph predictions showed strong rank agreement with B3LYP-D4/def2-SVP gaps (ρ = 0.836). SizeResGraph combined with targeted quantum-chemical verification therefore provides a scalable route from large repeat-unit libraries to tractable sets of low-gap candidates.
Agile methods continue to gain popularity. In particular, the Scrum method appears to be on the verge of becoming a de-facto standard in the industry, leading the so called Agile movement. While there are success stories and recommendations, there is little scientifically valid evidence of the challenges in the adoptio...
A. Marchenko, P. Abrahamsson· Agile Conference· 59 citations· ⚡11
A comprehensive taxonomy of the challenges faced when a medium-scale organization decided to adopt software platforms is provided, namely: business challenges, organizational challenges, technical challenges, and people challenges.
Yaser Ghanam, F. Maurer, P. Abrahamsson· Information and Software Tec...· 41 citations· ⚡3
It is shown that high article processing charges are not sufficiently justified by the publishers, which often lack transparency and may prevent authors from adopting OA.
D. Graziotin, Xiaofeng Wang, P. Abrahamsson· Scientometrics· 21 citations· ⚡1
MCGLPPI, a novel geometric representation learning framework that combines graph neural networks (GNNs) with the MARTINI molecular coarse-grained (CG) model to predict overall PPI properties accurately and efficiently, offers an effective and efficient solution for PPI overall property predictions.
Yang Yue, Shu Li, Yihua Cheng et al.· bioRxiv· 15 citations
PepPCBench enables a robust evaluation of PFNN-based methods and supports their continued development for peptide-protein structure prediction, and highlights the influence of peptide length, conformational flexibility, and training set similarity on prediction accuracy.
Si-Long Zhai, Huifeng Zhao, Ji-Ke Wang et al.· Journal of Chemical Informat...· 13 citations· ⚡1
Abstract Predicting properties from coordinate–category data—sets of vectors paired with categorical information—is fundamental to computational science, manifesting in materials science as predicting formation energies or elastic moduli from crystal structures. While large language models (LLMs) have increasingly been...
Nawaf Alampara, Santiago Miret, Kevin Maik Jablonka· Nature Computational Science· 13 citations
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