Skip to content
Open access

Accurate and Efficient NMR Crystallography through Machine-Learning Geometry Optimization and Shielding Prediction.

Aug 2026 · Journal of Physical Chemistry Letters · Vol 17 35, pp. 10115-10121 · 0 citations · 47 references
Medicine

Abstract

We evaluated a fully machine-learning-assisted workflow for NMR crystallography by combining the Universal Model for Atoms (UMA) interatomic potential for crystal structure optimization with the ShiftML3 prediction of solid-state NMR shieldings. Benchmarking against conventional periodic density functional theory (DFT) calculations for 1H, 13C, and 15N chemical shifts demonstrates that ML-based geometry optimization consistently improves the accuracy of 13C and 15N predictions relative to standard PBE optimization, highlighting the dominant role of structural refinement. ShiftML3 achieves DFT-level accuracy for shielding prediction and, when combined with UMA-optimized geometries, matches or surpasses periodic DFT for 13C and 15N while reducing the computational cost by orders of magnitude. We further show that hybrid PBE0 single-molecule corrections remain effective for both DFT- and ShiftML3-derived shieldings, extending their applicability to modern machine-learning models. These results establish a new computational paradigm for NMR crystallography by replacing both computational bottlenecks of the conventional DFT workflow with modern machine-learning models.

Read PDF

Similar papers

Open access Sep 2026

Accessible hybrid DFT-quality NMR crystallography via gas-phase machine learning interatomic potentials

The resulting MLIP/ShiftML3 workflow reduces computational costs by at least three orders of magnitude, making high-accuracy NMR crystallography accessible without HPC infrastructure, and opening the door to fast molecular dynamics simulations at the hybrid DFT level.

Shubha S. Gunaga, Rob Schurko, Sean T. Holmes et al. · 3 citations
Preprint Aug 2026

Machine-Learned NMR Shieldings in Molecular Solids with Built-In Hybrid-Functional Molecular Corrections

Fast and accurate chemical shielding estimators are essential for shielding-driven Nuclear Magnetic Resonance (NMR) crystallography. Machine-learning models for shielding predictions have matured significantly and today are primarily limited by the electronic structure reference data they are trained on. Here, we intro...

Matthias Kellner, Ruben Rodriguez-Madrid, Jacob B. Holmes et al. · 0 citations
Aug 2026

Improving Quantum-Chemical Prediction of 19F NMR Chemical Shifts via Machine Learning.

A machine-learning-assisted framework to improve quantum-chemical prediction of 19F NMR chemical shifts by using machine learning to diagnose and correct subset-dependent limitations in the shielding-shift relationship within a practical quantum-chemical workflow is developed.

Dong-Dong Chen, Yuan-Xiang Ye, Yi-Jie Zhu et al. · 0 citations
Open access Aug 2026

Resolution-standardized evaluation of ligand atomic coordinates in crystallographic structures using machine learning

The aBCC provides a common framework for assessing and communicating the local coordinate reliability between structural biologists and researchers in structure-based drug discovery and provide a foundation for further development and refinement of machine learning-based coordinate validation.

I. Miyaguchi, H. Hata, Takaaki Kuribayashi et al. · 0 citations
Preprint Sep 2026

Benchmarking Universal Machine Learning Force Fields for Crystal Structure Prediction of High-Energy Molecular Systems

This work tested the hypothesis that classical force-field pre-relaxation can provide a more suitable starting geometry for subsequent UMLIP relaxation on a large database of high energy molecular crystals, and revealed distinct trade-offs among the evaluated models.

Musiha Mahfuza Mukta, Osman Goni Ridwan, R. Perriot et al. · 0 citations
Aug 2026

STX150: A Curated Database for the Development and Validation of DP4+ Methods.

Structural elucidation remains a central challenge in modern chemistry, particularly in the determination of relative stereochemistry when experimental spectroscopic data are insufficient. Among computational approaches, the DP4+ method has become a widely adopted tool for NMR-based stereochemical assignment by combini...

Ezequiel R. Luciano, Martín G. Armas Argentino, M. B. Comba et al. · 0 citations

We use cookies to run the site and, with your consent, for analytics and to show ads. See our Cookie Policy.