Aug 2026· Nature Communications· Vol 17· 0 citations· 28 references
Medicine
TL;DR
A neural network is proposed, the Spin Echo to Pure Shift Network (SE2PSNet), that generates high-quality pure shift spectra with accurate integrals, resolving overlapping signals while preserving the sensitivity and accurate integral information, with broad potential applications.
Abstract
Pure shift methods greatly improve the resolution of nuclear magnetic resonance (NMR) spectra, aiding in the subsequent spectral analysis. However, existing approaches typically compromise sensitivity, introduce artifacts, or distort the signal integrals needed to quantify the amount of each component in a sample. Here, we propose a neural network, the Spin Echo to Pure Shift Network (SE2PSNet), that generates high-quality pure shift spectra with accurate integrals. Its input combines a set of spin echo spectra acquired at different echo times with a chemical shift binary spectrum produced by the existing SE2CSNet. From these, the network learns how NMR signals evolve across the spin echo spectra, while an attention mechanism with residual connections and a joint loss function amplify genuine signals, suppress noise, and extract integral-related features more accurately, thereby preserving both overall spectral quality and the weak signals essential for quantification. Across several representative samples, SE2PSNet resolved overlapping signals without introducing detectable artifacts, achieved sensitivity comparable to conventional single-pulse proton spectra, and provided accurate quantitative information. A neural network called SE2PSNet turns simple spin echo NMR data into high-quality pure shift spectra, resolving overlapping signals while preserving the sensitivity and accurate integral information, with broad potential applications.
Comprehensive evaluations across multiple biomolecular NMR experiments demonstrate that CLEAR consistently outperforms state-of-the-art reconstruction methods, reducing reconstruction errors (RLNE) by approximately 16-25% while exhibiting overall superior or competitive performance across multiple quantitative metrics,...
Jing-Min Lin, Ze Fang, Bo Chen et al.· Analytical Chemistry· 0 citations
This study presents a diffusion-based deep-learning framework for automatic phase-sensitive NMR spectrum reconstruction directly from common NMR experimental data, free of quadrature acquisition and phase correction operation.
Zhuoran Rong, Bo Chen, Jie Shao et al.· Analytical Chemistry· 0 citations
STELT (Spatiotemporal Extraction Laplace Transform), a lightweight deep-learning framework based on spatiotemporal feature extraction, is proposed, which achieves superior reconstruction accuracy and noise suppression with significantly reduced computational overhead.
Jing-Min Lin, Bo Chen, Guolan Peng et al.· Journal of Chemical Physics· 0 citations
Overlapping peaks and sample-dependent chemical shift variability prevent reliable metabolite recovery from complex biological spectra. This problem is critical in one-dimensional proton (1D 1H) NMR which has become the standard method providing fast acquisition and information-rich spectra in metabolomics and foodomic...
Jesper L. Hinrich, Pia S. Mayer, Bekzod Khakimov et al.· 0 citations
Multidimensional NMR spectroscopy provides rich molecular-level information on species and structures, with broad significance across chemistry, biology, and materials science. However, its widespread application is generally limited by prolonged acquisition times. Combining non-uniform sampling techniques with spect...
Bo Chen, Xun Guan, Zhuoran Rong et al.· National Science Review· 0 citations