Aug 2026· Journal of Chemical Information and Modeling· Vol 66, pp. 10503 - 10516· 0 citations· 79 references
Medicine
TL;DR
This work presents a physics-informed pretraining strategy that leverages simple empirical potentials to improve the robustness and stability of MLIPs for MD simulations and demonstrates that this physics-informed pretraining consistently improves both prediction accuracy as well as stability in MD.
Abstract
Machine Learning interatomic potentials (MLIPs) have emerged as powerful tools for molecular dynamics (MD) simulations with their competitive accuracy and computational efficiency. However, MLIPs often exhibit unphysical behavior when encountering configurations that deviate significantly from their training data distribution, leading to simulation instabilities and unreliable dynamics. This limits their reliability for materials simulations. We therefore present a physics-informed pretraining strategy that leverages simple empirical potentials to improve the robustness and stability of MLIPs for MD simulations. We demonstrate this approach through a pretraining-finetuning pipeline where MLIPs are initially pretrained on data labeled with embedded atom model (EAM) potentials and subsequently finetuned on the quantum mechanical ground truth data. Evaluation across three material systems (phosphorus, silica, and a subset of Materials Project) and three representative MLIP architectures (CGCNN, M3GNet, and TorchMD-NET) demonstrates that this physics-informed pretraining consistently improves both prediction accuracy as well as stability in MD compared to the baseline models.
Pretrained machine-learning interatomic potentials, so-called universal or foundation models offer an appealing starting point for atomistic simulations, but their accuracy for material-specific observables often remains limited without additional reference data (fine-tuning). Here, we systematically quantify how much...
AdaptNTK is introduced, a single-model framework that measures uncertainty as a regularized Mahalanobis distance in empirical neural tangent kernel (NTK) feature space, providing efficient single-model uncertainty estimation with sequential updates for data-efficient active learning.
The Active Learning Framework (ALF), an open-source Python package designed to streamline the design and deployment of MLIP training datasets on High Performance Computing resources, is introduced, illustrating ALF’s effectiveness in compiling datasets that capture essential chemical and structural regimes.
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Machine-learning interatomic potentials (MLIPs) trained by directly learning the total interatomic interaction energies can suffer from limited transferability, unphysical behavior beyond a finite cutoff, and large errors for out-of-distribution geometries such as transition states and uncommon conformers. We evaluate...
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