It is shown that cohesin, a protein complex that shapes genomic architecture, promotes GABAergic fate specification in a subset of neurons in the nematode Caenorhabditis elegans, highlighting a critical interplay among genome architecture, epigenetic remodeling, and transcriptional regulation in neuronal fate specification.
Abstract
Diverse genetic and epigenetic factors cooperate to specify cellular fates during development. Establishing these fates is especially critical in the nervous system, which comprises diverse neuronal cell types. How genomic architecture interfaces with epigenetic regulators to drive transcriptional programs underlying neuronal fates remains poorly understood. Here, we show that cohesin, a protein complex that shapes genomic architecture, promotes GABAergic fate specification in a subset of neurons in the nematode Caenorhabditis elegans. This process is facilitated by EOR-1, a homolog of the human promyelocytic leukemia zinc finger (PLZF) transcription factor. The nucleosome remodeling and deacetylase (NuRD) complex and TRA-4, another PLZF homolog, promote tyraminergic fate in the normally GABAergic neurons when cohesin or EOR-1 function is lost, revealing an antagonistic mechanism determining alternative neuronal fates. These findings highlight a critical interplay among genome architecture, epigenetic remodeling, and transcriptional regulation in neuronal fate specification and, given the evolutionary conservation of these factors, suggest a mechanism underlying neural development across species.
These findings reveal a previously unrecognized role for PRCs in establishing TAD-scale repressive chromatin domains during neuronal maturation, thereby safeguarding neuronal identity from external stimuli through broad silencing of alternative cell fate programs.
A unified mechanistic framework by which the level of YAP/TAZ activity determines enhancer landscapes that favor either differentiated or progenitor-like cellular states is proposed, providing a potential basis for applications to regenerative medicine and therapeutic interventions.
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How emerging single-cell and spatial multi-omics technologies, integrated with artificial intelligence-based modeling, enable mapping of cell state landscapes and transitional trajectories, transforming lineage plasticity from a descriptive phenomenon into a measurable and predictable property of tumor evolution is dis...
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It is shown that neuronal activation triggers genome-wide redistribution of CBP and p300 in hippocampal neurons, and KAT3 redistribution is identified as a key mechanism coupling neuronal activity to large-scale chromatin remodeling.
S. Niñerola, Beatriz del Blanco, Mirjam Cangonja et al.· bioRxiv· 0 citations
It is shown that UNC-3, the C. elegans homolog of the neurodevelopmental disorder gene EBF3, regulates not only the development of UNC-3–expressing neurons but also that of neighboring neurons, revealing previously unrecognized mechanisms of neural circuit assembly.
Jayson J. Smith, Seth R. Taylor, Honorine Destain et al.· Nature Communications· 0 citations
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