Sep 2026· Journal of Chemical Theory and Computation· Vol 22, pp. 9640 - 9654· 0 citations· 86 references
Abstract
In quantum chemical descriptions of solutions, solvents are treated either implicitly, accounting only for bulk properties, or explicitly by including solvent molecules in the calculations. Although explicit treatments are more accurate, they are often computationally prohibitive. As a cost-effective alternative, microsolvation models have emerged that include only a limited number of solvent molecules to capture the most relevant solute–solvent interactions. However, determining their optimal number, positions, and orientations remains a challenge. Existing approaches typically either build up solvent clusters in a stepwise, order-dependent manner or select solvent molecules based on geometric criteria without directly quantifying interaction strength. Here, we introduce the Free Energy Based Identification of Solvation Sites (FEBISS) 2, a revised microsolvation protocol based on Grid Inhomogeneous Solvation Theory (GIST) applied to molecular dynamics trajectories. The method identifies thermodynamically favorable solvation sites from Free Energy contributions. It automatically places, orients, and ranks solvent molecules by interaction strength, using a statistically averaged, order-independent orientation procedure that is applicable to arbitrary rigid solvents rather than water alone. This approach provides a physically grounded criterion for selecting the number of solvent molecules in microsolvated clusters. We demonstrate the applicability of the approach across a range of systems, from small organic molecules to transition-metal catalysts, and for various solvents. We show that explicit microsolvation affects the electronic structure even in systems traditionally considered weakly solvent-sensitive, highlighting FEBISS 2 as a practical methodology to set up physically meaningful microsolvation clusters for quantum chemical studies.
Accurate prediction of solvation free energies is essential for modeling phase partitioning and chemical behavior, a process fundamentally dependent on identifying relevant solution-phase molecular conformations. Standard implicit solvation models, while efficient, often fail to capture specific solute-solvent interact...
Michael R. Dooley, Shubham Vyas· Physical Chemistry, Chemical...· 0 citations
The explicit first solvation shell remains a pivotal challenge in quantum chemical studies of solution‐phase systems. A surface coverage‐based protocol to construct explicit solvation environment is presented, in which the number and arrangement of solvent molecules emerge from the percentage of Solvent Accessible Surf...
Yamil Hernández‐Urquieta, Andrea Moreno-Ceballos, M. E. Castro et al.· Journal of Computational Che...· 0 citations
Most chemical and biochemical reactions occur in solution; however, many details of the thermodynamics of solvation are not well understood, especially with regard to the role of energy and entropy in the solvation process. Currently, a prevailing view in the field is that the solvation free energy is fully determined...
W. Thompson, Gregory K. Schenter, C. Mundy et al.· Journal of Chemical Physics· 0 citations
Solute-solvent interactions are fundamental to understanding the stability, reactivity, and biological function of molecules. Spectroscopic techniques allow gaining molecular-level insights into these interactions. Here we explore the hydration of uracil, a model system for the behavior of biomolecules in an aqueous en...
Marine Fournier, Martin Procházka, Rémi Dupuy et al.· Physical Chemistry, Chemical...· 0 citations
ComPLAX, an open-source Python tool that automates the generation and optimization of targeted microsolvated clusters around highly localized active sites, provides a reproducible, out-of-the-box solution for explicit microsolvation workflows.
Federica Lauria, Andrea Maranzana· Journal of Chemical Informat...· 0 citations
Charge transfer (CT) is the delocalization of electron density from a donor to an acceptor. It is a crucial component of noncovalent interactions that significantly influences hydrogen bonding, ion solvation, and the structure of aqueous and biomolecular systems. Because direct experimental measurement of CT is chall...
Piotr Cieplak, Ray Luo, Yong Duan· Journal of Physical Chemistr...· 0 citations
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