Oct 2026· Physical Chemistry, Chemical Physics - PCCP· 0 citations
Medicine
Abstract
Accurate prediction of solvation free energies is essential for modeling phase partitioning and chemical behavior, a process fundamentally dependent on identifying relevant solution-phase molecular conformations. Standard implicit solvation models, while efficient, often fail to capture specific solute-solvent interactions that dictate conformational preference, particularly when strong intramolecular hydrogen bonds are present. In this work, we demonstrate that incorporating explicit solvation during conformational sampling reduces systematic errors in subsequent openCOSMO-RS predictions. Using the default openCOSMO-RS workflow as well as the global optimization algorithm (GOAT) and commandline energetic sorting (CENSO) workflow, we show that the inclusion of a single explicit water molecule acts as a "conformational chaperone", disrupting stable gas-phase intramolecular interactions and accessing geometries that are more consistent with solvent-exposed solution-phase conformations. Analysis of the resulting COSMO-RS σ-profiles reveals that these microsolvated geometries consistently expose critical polar surface area, translating even subtle structural shifts into significant thermodynamic corrections. For complex hydrogen-bond donor solutes in the SM8 dataset, this method yields an accuracy improvement, reducing the absolute root-mean-square error (RMSE) by 7.3% to 13.0% depending on the workflow. Furthermore, by identifying consistent structural motifs induced by the chaperone, such as systematic N-H and O-H bond elongations, we demonstrate that artificially stretching these bonds in non-solvated conformers successfully mimics some of the benefits of explicit solvation at negligible computational cost. While higher-order microsolvation (n > 1) yields diminishing returns due to solvent self-interaction, single-molecule microsolvation offers a physically rigorous, cost-effective strategy for correcting structural bias in environmental property predictions.
In quantum chemical descriptions of solutions, solvents are treated either implicitly, accounting only for bulk properties, or explicitly by including solvent molecules in the calculations. Although explicit treatments are more accurate, they are often computationally prohibitive. As a cost-effective alternative, micro...
Lukas Magenheim, Maren Podewitz· Journal of Chemical Theory a...· 0 citations
The explicit first solvation shell remains a pivotal challenge in quantum chemical studies of solution‐phase systems. A surface coverage‐based protocol to construct explicit solvation environment is presented, in which the number and arrangement of solvent molecules emerge from the percentage of Solvent Accessible Surf...
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Solute-solvent interactions are fundamental to understanding the stability, reactivity, and biological function of molecules. Spectroscopic techniques allow gaining molecular-level insights into these interactions. Here we explore the hydration of uracil, a model system for the behavior of biomolecules in an aqueous en...
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This study illustrates how subtle residue-localized conformational bias can affect the overall protein conformational dynamics influencing protein-protein interactions that are important for cellular functions and related to diseases.
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