We study a self-supervised generation task for single-cell gene expression vectors: given a set of vectors from a cell type, we aim to generate additional gene expression vectors of that cell type. For this task we characterize both the biological fidelity of the generated gene expression vectors and the scaling behavior of the pretraining loss. The model is a causal transformer paired with a learned quantized VAE tokenizer, trained with a cross-entropy loss. To evaluate the model, we condition it on held-out gene expression vectors of a cell type and generate vectors of gene expression, comparing the resulting distribution over gene expression vectors to the ground truth distribution of that cell type. We study the scaling properties of the proposed architecture by varying the number of trained parameters and the amount of training data. To our knowledge, we find the first jointly-fit two-exponent scaling law and compute-optimal frontier for a single-cell foundation model. Finally, we discuss how this pretrained model could be finetuned for perturbation response prediction.
Aleksandr Sharipov, Yusif Mukhtarov, Igor Molybog· 0 citations
The normalized Transformer (nGPT) realizes hyperspherical representation learning by constraining model parameter vectors and activation vectors to the unit hypersphere. In this paper, we describe a practical training recipe for nGPT and evaluate it on modern hybrid Mamba-2--Transformer Mixture-of-Experts (MoE) models. The recipe introduces Logit Gradient Preconditioning, Logarithmic Learning Rate Decay, GatedAdamW, angular update control, and optional exploration mechanisms. Compared with an unnormalized model of the same hybrid MoE architecture trained with AdamW, the 30B-total-parameter nGPT model reaches the same validation loss using approximately half as many training tokens. The recipe scales across the models considered, which contain up to 30B total parameters.
As agentic AI systems tackle more complex mathematical tasks, they increasingly rely on information retrieval (IR) to search problem databases, theorem libraries, and educational resources. However, choosing the right retriever remains difficult, as it is infeasible to directly isolate its effect on downstream performance. On the other hand, existing retrieval-specific benchmarks often fail to capture fine-grained mathematical relevance, penalizing relevant documents. We address this gap by introducing SABER-Math, the first fully automated benchmark for evaluating mathematical IR without expert annotation. Starting from 283K high-school-level math problems with solutions, SABER-Math builds challenging reranking tasks in three steps: (i) first, LLMs extract concise solution summaries and mathematical topics for each problem; (ii) then, per-query relevant documents are discovered using ontology topic-based and lexical solutions-summary-based similarities, and (iii) finally, a Swiss-style LLM preference tournament produces fine-grained relevance ratings for the documents. We evaluate lexical retrievers, specialized mathematical retrieval systems, and recent embedding models. We find that while modern embedding models substantially outperform classical and math-specific baselines, even the strongest systems struggle in symbol-heavy domains like Algebra and Calculus. Importantly, we show that general-purpose IR benchmarks such as MTEB do not reliably predict mathematical performance, especially for recent embedding models, highlighting the need for math-specific retrieval benchmarks.
Nikolay Georgiev, Maria Drencheva, Kseniia Ibragimova et al.· 0 citations
Long-term memory systems allow LLM agents to preserve information beyond a single context window, but most systems focus on storing and retrieving facts after extraction, leaving the write decision under-specified. What deserves memory can depend on the user's current task, topic, activity, or interaction partner, while uniform extraction applies one notion of importance across these different situations. We formulate this challenge as preference-conditioned write control and introduce AdaMem, which uses adaptive natural-language Memory Policies to personalize what an agent writes to memory. Each policy represents the user's memory preference for a particular interaction context, is updated from periodic feedback, and controls subsequent memory writing. We evaluate this loop in AdaMem-Bench, which assigns different memory preferences to six concurrent interaction personas across five ten-week stories. Across two extraction models and two feedback modes, AdaMem improves average QA accuracy over Mem0 from 80.0\% to 84.35\% while reducing persistent memory by 9.27\%. Our analyses show that explicit feedback helps models learn better memory policies, but current models still struggle to translate those policies into reliably selective writing behavior. AdaMem thus demonstrates the promise of adaptive write control while exposing policy execution as a central limitation of current memory agents. Our code is publicly available: https://github.com/galaxyChen/AdaMem
Xingyu Chen, Rui Wang, Zhaopeng Tu et al.· 0 citations
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Speech Emotion Recognition (SER) systems increasingly leverage self-supervised acoustic representations, yet their vulnerability to training-time attacks remains largely underexplored. This paper presents the first systematic study of poisoning-based backdoor attacks on SER, with a focus on threats enabled by text-to-speech (TTS) generated audio. We introduce a stealthy, low-energy acoustic trigger that can be embedded imperceptibly into both natural and synthetic speech, enabling scalable and consistent poisoning. Our experiments demonstrate that SER models can be reliably compromised with high attack success rates under low poisoning ratios, while maintaining near-clean performance on benign inputs. We further show that backdoor patterns exhibit strong cross-model transferability and that self-supervised representations are particularly susceptible to learning these triggers. These findings reveal that TTS technology dramatically lowers the barrier to effective backdoor attacks, exposing critical vulnerabilities in modern SER pipelines and motivating the urgent need for dedicated defenses.
Two recent studies \citep{jones2026llms, zeng2026lvlms} reach apparently contradictory conclusions about whether large vision-language models (LVLMs) can coordinate similarly to humans on efficient referring expressions. We control for task differences between the studies while directly comparing their prompting styles. We replicate the finding that models can coordinate efficient referring expressions when \textit{explicitly} prompted to do so, suggesting that other task differences are not responsible for divergent results. However, we also find that the same models fail to infer the need for communicative efficiency from a more \textit{implicit} prompt, highlighting critical differences between how humans and AI systems communicate.
Peter Zeng, Amie J. Paige, Weiling Li et al.· 0 citations
Recent advances in large language models (LLMs) have enabled the generation of high-quality prose, yet whether these models are capable of generating diverse or creative artifacts remains a contested question. In this work, we investigate the diversity of LLM-generated stories through the framework of narrative similarity. Using a contrastive framework and a dataset of human-written stories and prompts from r/WritingPrompts, we collect narrative similarity judgments across 10 representative LLMs, utilizing both human evaluations and three different automatic annotation methods. Our findings reveal a clear trend: LLM-generated narratives are consistently more similar to each other than human-written stories are. We demonstrate that frontier models in particular converge on a "mean" generic narrative that approximates individual human stories but lacks the collective diversity of human authors. Finally, we show that common mitigation strategies, including negative prompting and temperature scaling, fail to meaningfully address this homogeneity.
Diffusion Large Language Models (dLLMs) offer a promising avenue for parallel generation but face a trade-off between decoding speed and quality. While revocable decoding strategies attempt to mitigate errors by verifying and remasking tokens, they typically operate within a mixed-quality context. This leads to two critical failures: \textit{Error Propagation}, where new tokens absorb toxic information from erroneous context, and \textit{Local Error Reinforcement}, where errors mutually reinforce each other to evade detection. To alleviate these challenges, we propose ASRD (Anchor Supervised Revocable Decoding), a training-free framework that operates within the embedding space. ASRD explicitly decouples the decoding context into trusted \textit{Anchor Tokens}, which are identified via temporal consistency, and uncertain candidates. Leveraging a dynamic Anchor Tokens Cache, we introduce two complementary mechanisms: (1) Anchor-Guided Generation, which injects entropy-weighted anchor signals into masked positions to implicitly rectify attention toward the reliable global skeleton; and (2) Anchor-Perturbed Verification, which applies orthogonal perturbations to uncertain candidate tokens, destabilizing and remasking errors driven by fragile local consensus. Extensive experiments on math and coding benchmarks demonstrate that ASRD outperforms recent remasking baselines, achieving accuracy improvements of up to 6.4\% while accelerating inference throughput by up to 7.2$\times$.
Yizhen Yao, Qinglin Zhu, Runcong Zhao et al.· 0 citations
Emotion significantly influences cognition, enhancing memory and learning under certain conditions. Drawing on this principle, emotion-augmented deep learning investigates how affective states can improve neural network architectures and learning paradigms, achieving better generalization than non-emotional models. However, existing methods often rely solely on objective neurophysiological factors, neglecting the role of subjectivity in emotion. To bridge this gap, the present study introduces Emotional Regulation, a novel framework for modeling emotion in deep learning through artificial subjective experience. The method employs pre-training based on affective stimuli, balancing non-emotional and emotionally-influenced responses in downstream task optimization. Extensive experimentation was conducted in image classification, pre-training ResNet and ViT architectures on four emotional datasets, using CIFAR-10 and -100 as target benchmarks. Results reveal improvements over the aforementioned backbones, providing evidence of Emotional Regulation as a promising method for defining emotion-augmented deep learning through artificial subjective experience. Furthermore, the proposed approach overcomes the related work in image classification based on CIFAR, revealing Emotional Regulation as the new state-of-the-art in emotion-augmented deep learning for large-scale vision datasets. The study also enforces evidence of the impact of affective states in improving machine learning tasks' optimization, encouraging further investigation on emotion-inspired architectures.
Riccardo Emanuele Landi, Jo\~ao M. F. Rodrigues, Marta Chinnici· 0 citations
The autoregressive nature of large language models (LLMs) remains a significant bottleneck for inference, particularly in complex agentic workloads. While speculative decoding (SD) accelerates inference, current approaches rely on static drafting paradigms, utilising either autoregressive drafting models for reasoning or diffusion-based parallel drafting models for structured outputs. We empirically find that drafting accuracy fluctuates dramatically within a single sequence, leaving significant performance unrealised by static paradigms and coarse-grained routing. To address this volatility, we introduce WhiFlash, the first cross-paradigm SD method that unifies autoregressive and diffusion-based parallel drafting under a single token-level controller. WhiFlash adopts a fine-grained routing mechanism that employs either a lightweight entropy-based or a learned neural policy, both parametrised to provide a tunable balance between expected token gain and latency. To make high-frequency switching computationally viable, we introduce novel cache-management optimisations, Lazy Catch-up and KV-only Prefill, reducing switching overhead to below 7% of per-round latency. By capitalising on the complementary strengths of fundamentally distinct drafting architectures, WhiFlash achieves significantly higher acceptance lengths, yielding category-specific throughput gains of up to 69.6% over the state-of-the-art autoregressive EAGLE-3 and 37.3% over the diffusion-based DFlash.
Young D. Kwon, Miles Williams, Rui Li et al.· 0 citations
As large language models (LLMs) increasingly act as collaborative partners, human--AI alignment is often evaluated through explicit task success, accuracy, or reward optimization. Yet many collaborative settings depend on tacit understanding: whether an agent can align with a human's evaluative stance or representational priors without clear objectives, communication, or feedback. To study this capacity, we develop a spectrum-placement task inspired by the social party game Wavelength, in which humans and agents independently place concepts along subjective spectra. We operationalize the Tacit Understanding Index (TUX) as a pairwise behavioral measure of similarity between human and agent judgments, and evaluate it with 241 human participants and 200 profile-conditioned LLM agents across four models. We find that nearest human--agent pairs in trait space achieve significantly higher TUX, suggesting that tacit alignment is associated with person-level characteristics rather than reflecting only random similarity. Regression analyses show that TUX becomes more explainable as predictor sets become richer, with individual traits, decision-making styles, and confidence improving over aggregate trait-distance baselines. These findings suggest that TUX provides a measurable behavioral signal of human--LLM tacit understanding, while revealing the limits of profile-based conditioning for capturing deeper representational alignment.
Yueshen Li, Hanyi Min, Vedant Das Swain et al.· 0 citations
Positional encoding (PE) underpins how permutation-invariant Transformers represent sequence order, yet how positional information is processed and stored remains poorly understood. Modern PE methods such as RoPE still struggle on tasks such as long-context understanding or retrieval \cite{chen-etal-2025-hope}. Hence, a better understanding of the internal positional mechanism could help design better PE. Building on evidence that positional and semantic signals occupy nearly orthogonal subspaces in trained Transformers, we modify an encoder Transformer to process three explicitly disentangled streams: semantic, absolute positional (AP) and relative positional (RP), and confine the masked-language-modeling (MLM) objective to the semantic stream. This decoupling enables a clean mechanistic study and yields three take-aways. (1) The isolated AP subspace spontaneously collapses into a low-frequency two-dimensional manifold that captures the structure of the document; (2) Attention heads specialize into structure and semantic-oriented groups, with RP exclusively supporting the latter; (3) Standard positional encodings do not robustly retain macroscopic structure: RoPE and RP only weakly encode it, and entangled AP loses it in the final layers under MLM pressure. The disentangled approach preserves positional encoding, which improves linguistic representation on 49 of the 65 linguistic phenomena of the Flash-Holmes probing benchmark.
Pierre-Antoine Lequeu, Camille Barboule, Benjamin Piwowarski· 0 citations
