Cross-lingual biomedical entity linking (BEL) maps mentions in any language to unique identifiers in a biomedical knowledge base, supporting clinical and biomedical NLP applications. We identify two issues affecting current systems. First, the UMLS (Bodenreider,2004) aliases used to train cross-lingual BEL retrievers are heavily skewed toward English, so retrievers generalize poorly to non-English mentions. Second, although context is often necessary for disambiguation, naively injecting context into retrievers trained only to align aliases severely degrades retrieval. We propose BioELX, a retrieve-rerank framework that addresses both issues. For retrieval, we continue training SapBERT_multi (Liu et al., 2021b) using Wikidata-derived cross-lingual alias supervision, forming shared concept neighborhoods across languages. For reranking, we adapt pretrained LLM rerankers to entity linking through mention-anchored prompting, which marks the target mention so that rerankers score candidates with respect to the intended mention rather than other salient tokens in the context. Experiments show that BioELX achieves new state-of-the-art results on four cross-lingual BEL benchmarks, improving Recall@1 by 4.8 to 18.2 percentage points over prior best results, without any task-specific BEL annotations. Our code and resources are available at https://github.com/AI4MedCode/BioELX.
Yi Wang, Corina Dima, Liangyu Zhong et al.· 0 citations
Vision-Language-Action (VLA) models are increasingly expected to not only complete robot tasks, but also follow human instructions about how those tasks should be executed. However, existing robot datasets usually pair trajectories with coarse goal-level language, leaving execution-critical details such as active arm, approach direction, and contact region unspecified. This limits steerable policy learning and robotic video understanding. We introduce FineVLA, an open framework for action-aligned fine-grained VLA supervision. The framework includes: (1) a data construction tool that unifies 972,247 trajectories across 85K tasks from 10 open-source robot datasets and builds FineVLA-Data, a human-verified dataset of 47,159 fine-grained trajectories; (2) a held-out benchmark with 500 videos, 11,631 atomic facts, and 1,030 VQA questions; (3) a robotics-specialized VLM annotator for scalable fine-grained annotation; and (4) a steerable VLA policy trained with controlled mixtures of fine-grained and raw goal-level instructions. Our experiments yield three findings. First, fine-grained supervision does not sacrifice goal-level success: FG-only improves over Raw-only by +1.4 to +8.1 success-rate points across settings. Second, fine-grained and raw instructions are complementary, following a consistent inverted-U trend peaking at FG:Raw = 1:2 to 1:1. The best mixed setting reaches 86.8%/82.5% in RoboTwin simulation and 62.7/100 in real-world dual-arm manipulation (vs. 49.9 Raw-only). Third, fine-grained supervision improves steerable control: the largest real-world gains appear on pose (+23), color (+18), and approach direction (+18)--factors where goal-level instructions provide no guidance. Overall, fine-grained language should augment goal-level instructions: specifying how to execute alongside what to achieve. Project page: https://finevla.xlang.ai/
Xintong Hu, Xuhong Huang, Jinyu Zhang et al.· 0 citations
Prior work establishes that controlled contrastiveness between self-generated responses from large language models, set via reward scores, improves downstream preference tuning in English. We extend this method to multiple languages and evaluate two models across a total of 14 high and low-resource languages on a diverse set of tasks. Our central finding is that cross-lingual contrastive preference tuning on self-generations (CroCo) transfers without language-specific preference annotation. A reward model trained on English preferences (atop a multilingual base) produces useful within-language rankings across most languages, and pairing in either a monolingual or multilingual setting improves over each model on the majority of setups while preventing the catastrophic forgetting of supervised fine-tuning. We observe that the gains require on-policy data. Off-policy responses reduce the benefit and online preference optimization fails to improve over the offline variant. Specifically, on structured tasks, our method matches or exceeds the base in 6/7 languages for EuroLLM-9B and 4/7 settings for Aya-3B. On open-ended generation, evaluated by two judges, both tuned models win 28/30 times against their respective base across 15 evaluated languages (high and low-resource). Overall, we show promising directions for multilingual preference tuning using self-generations.
Mike Zhang, Ali Basirat, Desmond Elliott· 0 citations
Multimodal large language models (MLLMs) and diffusion models have each reached remarkable maturity: MLLMs excel at reasoning over heterogeneous multimodal inputs with strong semantic grounding, while diffusion models synthesize images and videos with photorealistic fidelity. We argue that these two families can be unified through a simple division of labor: MLLMs perform semantic planning, while diffusion models render pixels from high-level semantic guidance and low-level visual features. Building on this idea, we propose Bernini, a unified framework for video generation and editing. An MLLM-based planner predicts the target semantic representation directly in the ViT embedding space, and a DiT-based renderer synthesizes pixels conditioned on this plan, augmented by text features and, for editing, source VAE features for detail preservation. Because semantics serve as the interface, the planner and renderer can be trained separately and only lightly co-trained, preserving the pretrained strengths of both components while keeping training efficient. To better handle multiple visual inputs, we introduce Segment-Aware 3D Rotary Positional Embedding (SA-3D RoPE), and further incorporate chain-of-thought reasoning in the planner to better transfer understanding into generation. Bernini achieves state-of-the-art performance across a wide range of video generation and editing benchmarks, with the MLLM's pretrained understanding translating into strong generalization on challenging editing tasks.
Bernini Team, Chenchen Liu, Junyi Chen et al.· 0 citations
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Item difficulty must often be estimated before test administration, when no responses are yet available for calibration. While most response-free difficulty modelling approaches derive item-text features by hand for a separate statistical model, we fine-tune a transformer end-to-end on the wording, avoiding the theory-based feature design and the preprocessing that discards information. We address reading-comprehension multiple-choice items, whose difficulty depends on inferential demands spanning passage, question, and options, yet the simplest model sees one undifferentiated sequence and is trained on difficulty alone. We introduce and investigate two extensions to the joint-encoding baseline: a component-wise variant, which encodes the wording parts separately, and a multi-task variant, which adds an auxiliary task of question answering. We compare the methods across three training-set sizes sampled from a corpus of nearly 30,000 items whose labels approximate response-based Rasch difficulty. At the smallest training size, both extensions improve on the baseline, the multi-task variant across every metric, and component-wise encoding in rank ordering. Further research may ground the auxiliary supervision in observed responses and extend the approach to other item types.
An agent's probability report is paid for twice: by a strictly proper scoring rule, and by an approval rule for the decision it triggers. In this classical decision-coupled setting, non-affine approval is known to defeat truthful reporting. We show the conflict is endogenous: when feasible, the welfare-maximizing approval rule is never affine. The distortion, however, is predictable and can be designed around. There is a reserve report at which pretending to be the marginal type costs exactly the approval prize. Approving at or above the reserve screens types perfectly under every strictly proper score, and the reserve does not depend on the type distribution. A Lipschitz rule with a single kink attains first-best exactly; under strict feasibility no continuously differentiable rule does. The binding constraint is steepness, not smoothness. First-best is attainable within a slope budget if and only if the budget is at least the critical slope: the steepest chord of the pretending cost up to the reserve. Below it the welfare loss is cubic in the shortfall. Where the pretending cost is convex up to the reserve, as for Brier, log and power scores, the critical slope is closed-form. The instances are AI-agent oversight and marketplace operation.
Large language models are increasingly deployed as autonomous coding agents and have achieved remarkably strong performance on software engineering benchmarks. However, it is unclear whether such success transfers to computational scientific workflows, where tasks require not only strong coding ability, but also the ability to navigate complex, domain-specific procedures and to interpret results in the context of scientific claims. To address this question, we present AutoMat, a benchmark for evaluating LLM-based agents' ability to reproduce claims from computational materials science. AutoMat poses three interrelated challenges: recovering underspecified computational procedures, navigating specialized toolchains, and determining whether the resulting evidence supports a claim. By working closely with subject matter experts, we curate a set of claims from real materials science papers to test whether coding agents can recover and execute the end-to-end workflow needed to support (or undermine) such claims. We then evaluate multiple representative coding agent settings across several foundation models. Our results show that current LLM-based agents obtain low overall success rates on AutoMat, with the best-performing setting achieving a success rate of only 53%. Error analysis further reveals that agents perform worst when workflows must be reconstructed from paper text alone and that they fail primarily due to incomplete procedures, methodological deviations, and execution fragility. Taken together, these findings position AutoMat as both a benchmark for computational scientific reproducibility and a tool for diagnosing the current limitations of agentic systems in AI-for-science settings.
Ziyang Huang, Yi Cao, Ali K. Shargh et al.· 0 citations
When do language diffusion models memorize their training data, and how to quantitatively assess their true generative regime? We address these questions by showing that Uniform-based Discrete Diffusion Models (UDDMs) fundamentally behave as Associative Memories (AMs) $\textit{with emergent creative capabilities}$. The core idea of an AM is to reliably recover stored data points as $\textit{memories}$ by establishing distinct basins of attraction around them. Historically, models like Hopfield networks use an explicit energy function to guarantee these stable attractors. We broaden this perspective by leveraging the observation that energy is not strictly necessary, as basins of attraction can also be formed via conditional likelihood maximization. By evaluating token recovery of $\textit{training}$ and $\textit{test}$ examples, we identify in UDDMs a sharp memorization-to-generalization transition governed by the size of the training dataset: as it increases, basins around training examples shrink and basins around unseen test examples expand, until both later converge to the same level. Crucially, we can detect this transition using only the conditional entropy of predicted token sequences: memorization is characterized by vanishing conditional entropy, while in the generalization regime the conditional entropy of most tokens remains finite. Thus, conditional entropy offers a practical probe for the memorization-to-generalization transition in deployed models.
Bao Pham, Mohammed J. Zaki, Luca Ambrogioni et al.· 0 citations
Next Point-of-Interest (POI) recommendation ranks a user's likely next location based on check-in history. Most recent rankers compress the trajectory into a single user vector and score every candidate through the same representation, ignoring that every candidate carries geographic coordinates and that the relevance of a past visit depends on where the candidate is located. Target attention from click-through-rate prediction conditions the user representation on the scored item, but its operator was developed for web items without geometry. This paper proposes CaST-POI, a candidate-conditioned POI ranker that keeps a standard target-attention reader and adds two bucketised biases to the attention logits: one for the recency of each past visit and another for its distance to the candidate being scored. Different candidates therefore read the same trajectory with different attention weights, grounded in real geographic distance rather than inferred from item embeddings. Comparing against seven sequential recommenders trained with the same split on three datasets NYC, TKY and CA under per-user leave-one-out with full-vocabulary ranking, CaST-POI improves MRR over the strongest baseline by 5.1%, 7.6% and 14.5%. Holm-corrected paired tests confirm the gains on TKY and CA. Ablation study locates the gain in the explicit revisit gate and the candidate-relative spatial bias, whereas the candidate-independent temporal bias has no measurable effect on all datasets. Code is available at https://github.com/YuZhenyuLindy/CaST-POI.
Zhenyu Yu, Chunlei Meng, Yangchen Zeng et al.· 0 citations
We study how depth, finite precision, state dimension, and chain-of-thought (CoT) affect the expressive power of multi-layer state-space models (SSMs). For the explicit-table $K$-function-composition problem, a canonical benchmark for sequential information propagation, we prove that any $L$-layer SSM solving $(L+3)$-function composition must satisfy $d^2p=\Omega(N/L^3)$, where $d$ is the state dimension and $p$ is the per-scalar precision. Conversely, $K$-function composition is solved exactly by a $(K+1)$-layer generalized SSM with $d=1$ and $p=\Theta(\log N)$. This gives a worst-case depth hierarchy for this formal problem family. We then distinguish post-input reasoning, in which all thought tokens are generated after the input, from input-interleaved reasoning, in which thought tokens may be inserted while the input stream is being read. Post-input reasoning does not circumvent our communication-based lower-bound pipeline, whereas input-interleaved reasoning admits bidirectional simulations with general deterministic one-pass streaming algorithms at the granularity of persistent memory. Finally, width and precision are not interchangeable under exact step-preserving simulation in the base affine-state model, but become interchangeable through the streaming-memory characterization once input-interleaved reasoning is allowed.
Nikola Zubi\'c, Qian Li, Yuyi Wang et al.· 0 citations
Descriptive scientific metadata in public repositories are often incomplete and inconsistent with community standards and ontologies, limiting data FAIRness. Large language models (LLMs) offer a promising approach to automatically standardizing such metadata when provided with relevant standards in machine-actionable form, such as metadata templates from the CEDAR Workbench. Prompt engineering, however, provides only fixed snapshots of these standards and relies on an LLM's pretrained knowledge to interpret and satisfy their constraints. We evaluate whether giving an LLM access to metadata specifications and authoritative terminology at runtime improves automated metadata standardization. Methods: We present ARMS, a tool-augmented LLM agent that retrieves complete CEDAR metadata templates and dynamically queries authoritative biomedical terminology services at execution time. We compared ARMS with a prompt-based approach on 839 legacy metadata records from the Human BioMolecular Atlas Program (HuBMAP), using expert-standardized records as the reference standard. Results: ARMS outperformed the prompt-based approach, increasing precision from 0.56 to 0.93 and recall from 0.51 to 0.85, with improvements across all field categories and assay types. The largest gains occurred for ontology-constrained fields, where precision increased from 0.36 to 0.92. Conclusion: LLMs cannot convert legacy metadata to standards-adherent form without knowledge of the relevant standards. ARMS improves metadata standardization by providing runtime access to authoritative resources that define valid metadata. Machine-actionable metadata standards enhance LLM-based rectification of legacy metadata, especially when they can be queried dynamically.
Josef Hardi, Martin J. O'Connor, Marcos Martinez-Romero et al.· 0 citations
Reinforcement learning (RL) has become essential for post-training large language models (LLMs) in reasoning tasks. While scaling rollouts can stabilize training and enhance performance, the computational overhead is a critical issue. In algorithms like GRPO, multiple rollouts per prompt incur prohibitive costs, as a large portion of prompts provide negligible gradients and are thus of low utility. To address this problem, we investigate how to select high-utility prompts before the rollout phase. Our experimental analysis reveals that sample utility is non-uniform and evolving: the strongest learning signals concentrate at the ``learning edge", the intersection of intermediate difficulty and high uncertainty, which shifts as training proceeds. Motivated by this, we propose HIVE (History-Informed and online-VErified prompt selection), a dual-stage framework for data-efficient RL. HIVE utilizes historical reward trajectories for coarse selection and employs prompt entropy as a real-time proxy to prune instances with stale utility. By evaluating HIVE across multiple math reasoning benchmarks and models, we show that HIVE yields significant rollout efficiency without compromising performance.
Jiahao Wu, Ning Lu, Shengcai Liu et al.· 0 citations
