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graph neural networks

2,224 papers

#graph neural networks Open access Oct 2026

A Novel Mathematical Framework for Multi-Scale Neural Dynamics: Integrating Stochastic Differential Equations with Graph Neural Networks

The integration of multi-scale neural dynamics remains a fundamental challenge in computational neuroscience. This paper introduces a novel mathematical framework that integrates stochastic differential equations with graph neural networks to model multi-scale brain dynamics. Our approach treats neural activity, synapt...

Md Taufiq Nasseef · 0 citations
#graph neural networks Dataset Open access Oct 2026

Data, trained models and code for "STEPHY: A Graph Neural Inference Framework for Rapid Estimation of Regional Epidemic Dynamics from Large Viral Phylogenies"

Data, trained models and code behind STEPHY: A Graph Neural Inference Framework for Rapid Estimation of Regional Epidemic Dynamics from Large Viral Phylogenies (https://doi.org/10.21203/rs.3.rs-10631496/v2). This deposit holds what the paper's results are made of: the simulation benchmark, the trained models, the Danis...

Leke Lyu · 0 citations
#graph neural networks Open access Oct 2026

Exploring the key genes of colorectal “adenoma-cancer” based on graph transformer

Colorectal cancer (CRC) is one of the most lethal malignancies worldwide, and the precise identification of biomarkers from colonic adenoma to cancer is of great significance for preventing the development of adenocarcinoma. Given that existing methods inadequately capture the topological network relationships among ge...

Yue Yuan, Yu Liu, Jingchun Fan et al. · 0 citations
#graph neural networks Open access Oct 2026

Rigorous validation of graph-based network analysis reappraises biologically coherent ADHD-associated transcriptomic modules in peripheral blood

Background Graph attention networks (GATs) are increasingly applied to transcriptomic data because they integrate gene-network structure while producing attention weights that are often interpreted as indicators of biological importance. However, whether attention-derived explanations reliably reflect biologically mean...

Nehal M. Ali · 0 citations
#graph neural networks Open access Oct 2026

CALT-GNN: a graph neural network with cross-attention and long-tail experts for multi-omics cancer subtype classification

Cancer subtype classification based on molecular features is important for characterizing tumor heterogeneity, evaluating patient prognosis, and supporting precision treatment. Multi-omics integration provides complementary molecular information across genomic, epigenomic, transcriptomic, and proteomic levels. Howeve...

Ke Wang, Jin-Bo Zheng, Lu-Lu Zhao et al. · 0 citations
#graph neural networks Open access Oct 2026

Towards More Realistic and Practical Graph Backdoor Attacks

Graph Neural Networks (GNNs) have demonstrated remarkable performance on graph-based learning tasks and are increasingly deployed in security-critical applications. However, recent studies have shown that they are highly vulnerable to graph backdoor attacks (GBAs), where adversaries implant malicious triggers to induce...

Jiawei Chen · 0 citations
#graph neural networks Open access Oct 2026

Interval Estimation in Water Distribution Systems Using Physics-Informed Graph Neural Networks

Abstract Artificial Intelligence in general and Machine Learning (ML) in particular has the potential to play a key role in critical infrastructure such as Water Distribution Systems (WDSs). In the face of urban population growth, ML can pave the way towards smart cities by not only solving various tasks in WDSs but al...

Inaam Ashraf, André Artelt, David P. Leins et al. · 0 citations
#graph neural networks Open access Oct 2026

Drugging the Undruggable in Oncology: Structural Computation, Machine Learning, and Generative AI for Historically Intractable Targets

For four decades the central oncogenic drivers of human cancer the RAS GTPases, the transcription-factor MYC, mutant p53, and the protein-tyrosine phosphatases, fusion oncoproteins and intrinsically disordered regulators that surround them were regarded as undruggable: lacking deep, well-defined small-molecule binding...

Mikołaj Stańczak, Sarfaraz K. Niazi · 0 citations
#graph neural networks Dataset Open access Oct 2026

IMOS-SWIL District Heating Dataset

This dataset provides synchronized, high-resolution multi-physics measurements collected by IMOS-EPFL in collaboration with Aalborg University using the controlled district heating testbed at the Smart Water Infrastructures Laboratory (SWIL), Aalborg University, Denmark. The data were collected as part of the Intellige...

Keivan Faghih Niresi, Christian Møller Jensen, Carsten Skovmose Kallesøe et al. · 0 citations
#graph neural networks Review Open access Oct 2026

Artificial Intelligence in Photodynamic Therapy: From Molecular Design of Photosensitizers to Intelligent Delivery, Adaptive Dosimetry, and Personalized Prognostication of Results

Photodynamic therapy (PDT) is a minimally invasive therapeutic approach based on the light-induced activation of a photosensitizer in the presence of molecular oxygen, resulting in the generation of reactive oxygen species, including singlet oxygen. Despite local selectivity and low systemic toxicity, reproducibility o...

R. Marunych, D. Bartusik-Aebisher, Klaudia Dynarowicz et al. · 0 citations
#graph neural networks Dataset Open access Oct 2026

Mapping Urban Mixed Land Use via Multimodal Fusion and Large Language Models

The precise delineation of urban land use, particularly mixed land use, is essential for sustainable urban planning and resource allocation. However, traditional pixel-based mapping methods face a profound "semantic gap" and struggle to decode the complex, overlapping functional dynamics of modern cities. This study pr...

Youcheng Song · 0 citations
#graph neural networks Dataset Open access Oct 2026

Strain-Engineered Magnetism, Super-Exchange Physics, and Thermal Phase Transitions in Monolayer Chromium Trihalides CrX3 (X = Cl, Br, I)

This repository contains the Python calculation scripts, raw data JSON files, and publication-quality vector figures supporting the manuscript: "Strain-Engineered Magnetism, Super-Exchange Physics, and Thermal Phase Transitions in Monolayer Chromium Trihalides CrX3 (X = Cl, Br, I)" ### Repository Structure & Contents:...

A. Al‐Zubi · 0 citations

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Microsoft Research Blog Jul 13, 2026

Verifying Rust cryptography in SymCrypt, from standards to code

Cryptographic code supports vital protections in modern computing systems. Learn how a new method helps verify code as developers write it while preserving speed and adaptability as it gets implemented and evolves. The post Verifying Rust cryptography in SymCrypt, from standards to code appeared first on Microsoft Research.

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