Unraveling the roles of DKK1 and S100P in pancreatic ductal adenocarcinoma: Insights from machine learning, single-cell/spatial transcriptomics, and functional validation
Functional assays confirmed that DKK1 and S100P significantly promote PDAC cell proliferation and migration in the tumor microenvironment.
Abstract
Highlights • Multi-omics integration and machine learning identified DKK1 and S100Pas PDAC prognostic genes.• scRNA-seq and spatial transcriptomics revealed distinct expression patterns in the tumor microenvironment.• Functional assays confirmed that DKK1 and S100P significantly promote PDAC cell proliferation and migration.
Highlights • Single-cell and machine learning defined macrophage-driven LIHC subtypes.• LGALS1 was identified as the top SHAP-ranked therapeutic evasion driver.• LGALS1 was enriched in macrophage and fibroblast lineages in LIHC.• LGALS1 silencing impaired HCC growth, migration, invasion, and clonogenicity.
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Single-cell, spatial transcriptomic and multi-omics analyses reveal endothelial-enriched RAPGEF2 in KIRC and Experimental validation links RAPGEF2 to tumor suppression and immunotherapy benefit.
Yan-Fei Chen, Xiao-Xue Yu, Chao Cai et al.· Translational Oncology· 0 citations
High-resolution mapping of 52,384 cells uncovers hierarchical intra-tumor heterogeneity in HCC and TMEM176B is identified as the link between tumor malignancy hierarchy and immune remodeling.
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Highlights • Single-cell analysis identifies M8 fibroblast subcluster as dominant post-NACT population linked to ovarian cancer chemo-resistance.• NHP2 shows high diagnostic value (AUC=0.758) and predicts poor survival, driving ovarian cancer progression.• NHP2 knockdown suppresses proliferation, migration and invasion...
Mingqin Kuang, Chang-Mei Shen, Chun-Ping Yang et al.· Translational Oncology· 0 citations
Heterogeneity in cancer‐associated fibroblast (CAF) infiltration within the tumor microenvironment is closely associated with gastric cancer progression and immune evasion; however, precise CAF‐related diagnostic markers and actionable therapeutic targets remain scarce.
Si-Hui Hou, Meng-Zhu Sang, Yan Wang et al.· Journal of Gastroenterology...· 0 citations
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