Jun 2026· Nature Protocols· 1 citation· 44 references
Medicine
TL;DR
The Comprehensive VS Platform with AI Engine (CVSP-AIE) for drug discovery from compound libraries integrates three AI models: KarmaDock, a fast docking model that directly updates atomic coordinates; CarsiDock, an accurate docking model that predicts protein-ligand distances and reconstructs binding poses; and RTMScore, an accurate scoring model that learns residue-atom distance distributions for affinity prediction.
A decision-oriented taxonomy and a benchmark-driven evaluation playbook that specifies minimum standards for splits, metrics, baselines, and ablations to isolate the topological contribution are presented.
Beatriz Suay-García, Antonio Falcó· Briefings in Bioinformatics· 0 citations
The integrated workflow supports computational narrowing of chemical space and target-specific lead prioritization and should be considered computational leads requiring biochemical, cellular, pharmacokinetic and toxicity validation before any therapeutic claim is made.
Harshveer Singh Jaitawat, Dr. Thanugula ShivaPrasad Sharma, Dr. H.S. Udawat et al.· EPRA International Journal o...· 0 citations
This chapter describes a structure-based computational approach to perform high-throughput ligand screens of chemical libraries using open-source software programs and illustrates this workflow with the enzymatic molecular target NAD(P)H:quinone oxidoreductase1 (NQO1), which is overexpressed in a number of human solid tumors.
Audrey G. Fikes, Melissa C. Srougi· Methods in molecular biology· 0 citations
This work systematically evaluates the performance of a popular ML-based docking method, DiffDock-Pocket, on high-throughput screening (HTS) data sets derived from the PubChem BioAssay database, a premier source of bioactivity data.
Furyal Ahmed, Matthew B. Soellner, Charles L. Brooks· Journal of Chemical Informat...· 0 citations
Results indicate that 2D-based docking-score surrogate modeling can provide a reproducible and retrainable strategy for large-scale structure-based virtual screening by concentrating docking resources on a smaller, enriched subset of compounds.
Jongkeun Choi· International Journal of Mol...· 0 citations
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