Oct 2026· Journal of the American Chemical Society· 0 citations· 27 references
Medicine
TL;DR
These results identify KpbH as the first native PLP-dependent enzyme that catalyzes an l-aspartate-dependent decarboxylative Mannich-type C-C bond-forming reaction and reveal a biosynthetic strategy for constructing a noncanonical amino acid-like C-C bond scaffold.
Abstract
Kaitocephalin (KCP) is a fungal neuroactive natural product bearing a peptide-like yet nonpeptidic amino acid-derived scaffold in which amino acid-like units are connected by C-C bonds rather than peptide bonds. The enzymatic construction of this unusual scaffold has remained unresolved. Here, we identify KpbH as a pyridoxal 5'-phosphate (PLP)-dependent enzyme that couples pyrroline-5-carboxylate, generated from l-ornithine, with l-aspartate to form (2S,5R)-5-[(S)-2-amino-2-carboxyethyl]pyrrolidine-2-carboxylic acid (ACPCA), which corresponds to the nonpeptidic Ala-Pro substructure of KCP. D2O-labeling experiments showed enzyme-controlled, solvent-derived deuterium incorporation at C7 of ACPCA, supporting a decarboxylative Mannich-type mechanism. Feeding of a deuterium-enriched ACPCA-containing reaction mixture to the KCP-producing fungus Eupenicillium shearii resulted in deuterium incorporation into KCP, linking ACPCA to KCP biosynthesis. These results identify KpbH as the first native PLP-dependent enzyme that catalyzes an l-aspartate-dependent decarboxylative Mannich-type C-C bond-forming reaction and reveal a biosynthetic strategy for constructing a noncanonical amino acid-like C-C bond scaffold.
The RiPP-modifying enzyme YmI is reported, a bifunctional Fe/αKGD that catalyzes Cβ-hydroxylation of Phe19 and Cα-epimerization of Ile20 on the precursor peptide YmA toward the formation of YM-216391, unveiling an unprecedented mechanism and novel bifunctionality, markedly expanding the reaction landscape for αKG-depen...
Kai Zhang, Lian Wu, Min-Jie Yang et al.· Journal of the American Chem...· 0 citations
Pyridoxal 5'-phosphate (PLP) functions as a vital cofactor in numerous biochemical processes. To perform its role as a cofactor, PLP has to first form a Schiff base complex with the enzyme, known as the internal aldimine, which is an important step for the function of all PLP dependent enzymes. In this study, we invest...
Shreya Rastogi, A. Chandra· Journal of Physical Chemistr...· 0 citations
Pyridoxal 5'-phosphate (PLP)-dependent aminotransferases play a central role in nucleoside antibiotic biosynthesis, where they catalyze the conversion of ribose-derived aldehyde intermediates into aminonucleosides by introducing critical amino functional groups. Despite their widespread occurrence in the biosynthetic p...
Krushnamurthy Pattanayakanahalli Henjarappa, Mahima Ganguly, Aritra Mukherjee et al.· ACS Chemical Biology· 0 citations
Fub7 is a rare pyridoxal 5'-phosphate (PLP)-dependent enzyme that can subsequently catalyze the γ-elimination of O-acetyl-l-homoserine (OAH) and Michael addition with n-valeraldehyde (NVA) to synthesize 5-alkyl-pipecolic acid, which shows significant potential in synthetic chemistry. In this study, we constructed the c...
Jia-Xing Sheng, Xiang-Hui Zhang, Zheng-Yu Liang et al.· Journal of Chemical Informat...· 0 citations
ABSTRACT 2,5-Dihydroxypyridine (2,5-DHP) is a potentially carcinogenic intermediate in pyridine catabolism. Hpo, a non-heme Fe(II)-dependent dioxygenase from Pseudomonas putida S16, catalyzes ring cleavage of 2,5-DHP, yet its structure has remained uncharacterized. We determined the crystal structure of Hpo at 2.56 Å r...
Zhen-Yu Cheng, Xu Han, Hong-Li Wei et al.· Applied and Environmental Mi...· 0 citations
This work identified two enzymes, IamCYP71D761 and IamCYP706V18, in Isodon amethystoides, which specifically mediate the C3α- and C15β-hydroxylation of ent-kaurene with high stereoselectivity and regioselectivity, respectively, generating 3, a key precursor in the biosynthesis of GLA.
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