Oct 2026· IEEE Transactions on Knowledge and Data Engineering· Vol 38, pp. 6572-6585· 0 citations· 46 references
Abstract
Graph Neural Network (GNN) explainers aim to identify explanatory subgraphs that provide rationales for GNNs’ predictions. Nevertheless, the distribution shift of subgraphs introduces out-of-distribution (OOD) issues into GNNs’ predictions. The OOD issues compromise explainers’ optimization, as the optimization relies on the prediction differences between the original graph and the subgraph. To this end, we propose a plug-and-play framework to adjust the distribution shift of subgraphs during the explainers’ optimization. By introducing a distribution shift consistency objective, we constrain explanatory subgraphs of similar graphs to be consistent, modeling the learning of explanation as a consistency-guided “denoising” process. Additionally, we propose a parameter-sharing generator to act as a “noise-adding” process in each epoch. This generator learns proxy graphs of explanatory subgraphs to adjust the distribution shift, enhancing the explainers’ optimization. We apply the proposed framework to three state-of-the-art explainers and evaluate its performance on four real-world datasets. The results demonstrate that the learned graphs align with the original graphs’ distribution and enhance the performance of explainers in terms of AUC-ROC, Robust Fidelity, and Stability. Furthermore, it significantly outperforms three state-of-the-art distribution shift adjusting algorithms.
Agile methods continue to gain popularity. In particular, the Scrum method appears to be on the verge of becoming a de-facto standard in the industry, leading the so called Agile movement. While there are success stories and recommendations, there is little scientifically valid evidence of the challenges in the adoptio...
A. Marchenko, P. Abrahamsson· Agile Conference· 59 citations· ⚡11
A comprehensive taxonomy of the challenges faced when a medium-scale organization decided to adopt software platforms is provided, namely: business challenges, organizational challenges, technical challenges, and people challenges.
Yaser Ghanam, F. Maurer, P. Abrahamsson· Information and Software Tec...· 41 citations· ⚡3
It is shown that high article processing charges are not sufficiently justified by the publishers, which often lack transparency and may prevent authors from adopting OA.
D. Graziotin, Xiaofeng Wang, P. Abrahamsson· Scientometrics· 21 citations· ⚡1
MCGLPPI, a novel geometric representation learning framework that combines graph neural networks (GNNs) with the MARTINI molecular coarse-grained (CG) model to predict overall PPI properties accurately and efficiently, offers an effective and efficient solution for PPI overall property predictions.
Yang Yue, Shu Li, Yihua Cheng et al.· bioRxiv· 15 citations
PepPCBench enables a robust evaluation of PFNN-based methods and supports their continued development for peptide-protein structure prediction, and highlights the influence of peptide length, conformational flexibility, and training set similarity on prediction accuracy.
Si-Long Zhai, Huifeng Zhao, Ji-Ke Wang et al.· Journal of Chemical Informat...· 13 citations· ⚡1
OmniMol is presented, a framework using hypergraphs to improve predictions of molecular properties, addressing challenges of imperfect data annotation and enhancing model explainability, and achieves state-of-the-art performance in properties prediction.
Assistant Professor Pat Pataranutaporn describes a new interface that lets everyday users glimpse inside an AI's neural network before their chatbot ever says a word.
Microsoft Research Blog· microsoft.comJul 13, 2026
Cryptographic code supports vital protections in modern computing systems. Learn how a new method helps verify code as developers write it while preserving speed and adaptability as it gets implemented and evolves. The post Verifying Rust cryptography in SymCrypt, from standards to code appeared first on Microsoft Research.
MIT News · Artificial Intelligence· news.mit.eduJul 6, 2026
PhD student Rachel Sava, winner of the Envisioning the Future of Computing Prize, explores transformative improvements and dystopian risks of neural technology.